Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS13720 and RR41_RS13725 are separated by 42 nucleotides RR41_RS13725 and RR41_RS13730 are separated by 88 nucleotides RR41_RS13730 and RR41_RS13735 are separated by 4 nucleotides
RR41_RS13720: RR41_RS13720 - LysR family transcriptional regulator, at 2,869,287 to 2,870,207
_RS13720
RR41_RS13725: RR41_RS13725 - IclR family transcriptional regulator PcaU, at 2,870,250 to 2,871,062
_RS13725
RR41_RS13730: RR41_RS13730 - MBL fold metallo-hydrolase, at 2,871,151 to 2,872,017
_RS13730
RR41_RS13735: RR41_RS13735 - YeeE/YedE family protein, at 2,872,022 to 2,872,435
_RS13735
Position (kb)
2870
2871
2872 Strain fitness (log2 ratio)
-2
-1
0
1 at 2869.306 kb on + strand at 2869.454 kb on - strand, within RR41_RS13720 at 2869.706 kb on + strand, within RR41_RS13720 at 2869.778 kb on - strand, within RR41_RS13720 at 2869.785 kb on + strand, within RR41_RS13720 at 2869.875 kb on - strand, within RR41_RS13720 at 2870.224 kb on - strand at 2870.236 kb on + strand at 2870.313 kb on + strand at 2870.360 kb on + strand, within RR41_RS13725 at 2870.361 kb on - strand, within RR41_RS13725 at 2870.451 kb on + strand, within RR41_RS13725 at 2870.482 kb on - strand, within RR41_RS13725 at 2870.488 kb on - strand, within RR41_RS13725 at 2870.523 kb on + strand, within RR41_RS13725 at 2870.595 kb on - strand, within RR41_RS13725 at 2870.788 kb on - strand, within RR41_RS13725 at 2870.807 kb on + strand, within RR41_RS13725 at 2870.812 kb on - strand, within RR41_RS13725 at 2870.814 kb on - strand, within RR41_RS13725 at 2870.846 kb on - strand, within RR41_RS13725 at 2871.176 kb on - strand at 2871.296 kb on - strand, within RR41_RS13730 at 2871.355 kb on + strand, within RR41_RS13730 at 2871.373 kb on - strand, within RR41_RS13730 at 2871.373 kb on - strand, within RR41_RS13730 at 2871.396 kb on + strand, within RR41_RS13730 at 2871.399 kb on - strand, within RR41_RS13730 at 2871.409 kb on + strand, within RR41_RS13730 at 2871.439 kb on - strand, within RR41_RS13730 at 2871.602 kb on + strand, within RR41_RS13730 at 2871.774 kb on - strand, within RR41_RS13730
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 2,869,306 + +0.2 2,869,454 - RR41_RS13720 0.18 -0.0 2,869,706 + RR41_RS13720 0.45 -1.6 2,869,778 - RR41_RS13720 0.53 -1.0 2,869,785 + RR41_RS13720 0.54 -1.6 2,869,875 - RR41_RS13720 0.64 -0.8 2,870,224 - +1.2 2,870,236 + -1.8 2,870,313 + -0.8 2,870,360 + RR41_RS13725 0.14 -0.8 2,870,361 - RR41_RS13725 0.14 -0.6 2,870,451 + RR41_RS13725 0.25 -1.5 2,870,482 - RR41_RS13725 0.29 -1.3 2,870,488 - RR41_RS13725 0.29 -0.3 2,870,523 + RR41_RS13725 0.34 +0.2 2,870,595 - RR41_RS13725 0.42 -1.2 2,870,788 - RR41_RS13725 0.66 -1.2 2,870,807 + RR41_RS13725 0.69 +1.1 2,870,812 - RR41_RS13725 0.69 -1.1 2,870,814 - RR41_RS13725 0.69 -0.8 2,870,846 - RR41_RS13725 0.73 -1.8 2,871,176 - -0.2 2,871,296 - RR41_RS13730 0.17 +0.4 2,871,355 + RR41_RS13730 0.24 -1.0 2,871,373 - RR41_RS13730 0.26 +0.5 2,871,373 - RR41_RS13730 0.26 +0.2 2,871,396 + RR41_RS13730 0.28 +0.2 2,871,399 - RR41_RS13730 0.29 -0.2 2,871,409 + RR41_RS13730 0.30 -0.4 2,871,439 - RR41_RS13730 0.33 -0.8 2,871,602 + RR41_RS13730 0.52 +0.5 2,871,774 - RR41_RS13730 0.72 -0.5
Or see this region's nucleotide sequence