Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13725

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS13720 and RR41_RS13725 are separated by 42 nucleotidesRR41_RS13725 and RR41_RS13730 are separated by 88 nucleotidesRR41_RS13730 and RR41_RS13735 are separated by 4 nucleotides RR41_RS13720: RR41_RS13720 - LysR family transcriptional regulator, at 2,869,287 to 2,870,207 _RS13720 RR41_RS13725: RR41_RS13725 - IclR family transcriptional regulator PcaU, at 2,870,250 to 2,871,062 _RS13725 RR41_RS13730: RR41_RS13730 - MBL fold metallo-hydrolase, at 2,871,151 to 2,872,017 _RS13730 RR41_RS13735: RR41_RS13735 - YeeE/YedE family protein, at 2,872,022 to 2,872,435 _RS13735 Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -2 -1 0 1at 2869.306 kb on + strandat 2869.454 kb on - strand, within RR41_RS13720at 2869.706 kb on + strand, within RR41_RS13720at 2869.778 kb on - strand, within RR41_RS13720at 2869.785 kb on + strand, within RR41_RS13720at 2869.875 kb on - strand, within RR41_RS13720at 2870.224 kb on - strandat 2870.236 kb on + strandat 2870.313 kb on + strandat 2870.360 kb on + strand, within RR41_RS13725at 2870.361 kb on - strand, within RR41_RS13725at 2870.451 kb on + strand, within RR41_RS13725at 2870.482 kb on - strand, within RR41_RS13725at 2870.488 kb on - strand, within RR41_RS13725at 2870.523 kb on + strand, within RR41_RS13725at 2870.595 kb on - strand, within RR41_RS13725at 2870.788 kb on - strand, within RR41_RS13725at 2870.807 kb on + strand, within RR41_RS13725at 2870.812 kb on - strand, within RR41_RS13725at 2870.814 kb on - strand, within RR41_RS13725at 2870.846 kb on - strand, within RR41_RS13725at 2871.176 kb on - strandat 2871.296 kb on - strand, within RR41_RS13730at 2871.355 kb on + strand, within RR41_RS13730at 2871.373 kb on - strand, within RR41_RS13730at 2871.373 kb on - strand, within RR41_RS13730at 2871.396 kb on + strand, within RR41_RS13730at 2871.399 kb on - strand, within RR41_RS13730at 2871.409 kb on + strand, within RR41_RS13730at 2871.439 kb on - strand, within RR41_RS13730at 2871.602 kb on + strand, within RR41_RS13730at 2871.774 kb on - strand, within RR41_RS13730

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,869,306 + +0.2
2,869,454 - RR41_RS13720 0.18 -0.0
2,869,706 + RR41_RS13720 0.45 -1.6
2,869,778 - RR41_RS13720 0.53 -1.0
2,869,785 + RR41_RS13720 0.54 -1.6
2,869,875 - RR41_RS13720 0.64 -0.8
2,870,224 - +1.2
2,870,236 + -1.8
2,870,313 + -0.8
2,870,360 + RR41_RS13725 0.14 -0.8
2,870,361 - RR41_RS13725 0.14 -0.6
2,870,451 + RR41_RS13725 0.25 -1.5
2,870,482 - RR41_RS13725 0.29 -1.3
2,870,488 - RR41_RS13725 0.29 -0.3
2,870,523 + RR41_RS13725 0.34 +0.2
2,870,595 - RR41_RS13725 0.42 -1.2
2,870,788 - RR41_RS13725 0.66 -1.2
2,870,807 + RR41_RS13725 0.69 +1.1
2,870,812 - RR41_RS13725 0.69 -1.1
2,870,814 - RR41_RS13725 0.69 -0.8
2,870,846 - RR41_RS13725 0.73 -1.8
2,871,176 - -0.2
2,871,296 - RR41_RS13730 0.17 +0.4
2,871,355 + RR41_RS13730 0.24 -1.0
2,871,373 - RR41_RS13730 0.26 +0.5
2,871,373 - RR41_RS13730 0.26 +0.2
2,871,396 + RR41_RS13730 0.28 +0.2
2,871,399 - RR41_RS13730 0.29 -0.2
2,871,409 + RR41_RS13730 0.30 -0.4
2,871,439 - RR41_RS13730 0.33 -0.8
2,871,602 + RR41_RS13730 0.52 +0.5
2,871,774 - RR41_RS13730 0.72 -0.5

Or see this region's nucleotide sequence