Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13505

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS13495 and RR41_RS13500 are separated by 198 nucleotidesRR41_RS13500 and RR41_RS13505 are separated by 158 nucleotidesRR41_RS13505 and RR41_RS13510 are separated by 98 nucleotidesRR41_RS13510 and RR41_RS13515 are separated by 154 nucleotides RR41_RS13495: RR41_RS13495 - MBL fold metallo-hydrolase, at 2,819,432 to 2,820,451 _RS13495 RR41_RS13500: RR41_RS13500 - Rrf2 family transcriptional regulator, at 2,820,650 to 2,821,198 _RS13500 RR41_RS13505: RR41_RS13505 - FAD-dependent oxidoreductase, at 2,821,357 to 2,822,562 _RS13505 RR41_RS13510: RR41_RS13510 - type 1 glutamine amidotransferase domain-containing protein, at 2,822,661 to 2,823,353 _RS13510 RR41_RS13515: RR41_RS13515 - MerR family transcriptional regulator, at 2,823,508 to 2,823,924 _RS13515 Position (kb) 2821 2822 2823Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2820.484 kb on - strandat 2820.520 kb on + strandat 2820.657 kb on - strandat 2820.678 kb on - strandat 2821.054 kb on + strand, within RR41_RS13500at 2821.117 kb on - strand, within RR41_RS13500at 2821.553 kb on + strand, within RR41_RS13505at 2821.554 kb on - strand, within RR41_RS13505at 2821.554 kb on - strand, within RR41_RS13505at 2821.556 kb on + strand, within RR41_RS13505at 2821.658 kb on + strand, within RR41_RS13505at 2821.659 kb on - strand, within RR41_RS13505at 2821.751 kb on + strand, within RR41_RS13505at 2821.822 kb on - strand, within RR41_RS13505at 2821.822 kb on - strand, within RR41_RS13505at 2822.189 kb on + strand, within RR41_RS13505at 2822.298 kb on - strand, within RR41_RS13505at 2822.410 kb on + strand, within RR41_RS13505at 2822.482 kb on - strandat 2822.563 kb on + strandat 2822.585 kb on + strandat 2822.585 kb on + strandat 2822.594 kb on + strandat 2822.682 kb on + strandat 2822.683 kb on - strandat 2822.683 kb on - strandat 2822.683 kb on - strandat 2822.734 kb on - strand, within RR41_RS13510at 2822.825 kb on - strand, within RR41_RS13510at 2822.896 kb on - strand, within RR41_RS13510at 2822.928 kb on - strand, within RR41_RS13510at 2822.952 kb on + strand, within RR41_RS13510at 2822.953 kb on - strand, within RR41_RS13510at 2822.953 kb on - strand, within RR41_RS13510at 2823.018 kb on + strand, within RR41_RS13510at 2823.067 kb on + strand, within RR41_RS13510at 2823.068 kb on - strand, within RR41_RS13510at 2823.222 kb on - strand, within RR41_RS13510at 2823.233 kb on - strand, within RR41_RS13510at 2823.233 kb on - strand, within RR41_RS13510at 2823.233 kb on - strand, within RR41_RS13510at 2823.257 kb on - strand, within RR41_RS13510at 2823.308 kb on + strandat 2823.310 kb on + strandat 2823.337 kb on - strandat 2823.373 kb on - strandat 2823.391 kb on + strandat 2823.467 kb on + strandat 2823.473 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,820,484 - +0.3
2,820,520 + -0.4
2,820,657 - +0.3
2,820,678 - -0.0
2,821,054 + RR41_RS13500 0.74 -0.9
2,821,117 - RR41_RS13500 0.85 +0.9
2,821,553 + RR41_RS13505 0.16 +1.9
2,821,554 - RR41_RS13505 0.16 -0.7
2,821,554 - RR41_RS13505 0.16 -1.1
2,821,556 + RR41_RS13505 0.17 +3.2
2,821,658 + RR41_RS13505 0.25 -0.9
2,821,659 - RR41_RS13505 0.25 -1.1
2,821,751 + RR41_RS13505 0.33 -1.3
2,821,822 - RR41_RS13505 0.39 -1.1
2,821,822 - RR41_RS13505 0.39 +0.9
2,822,189 + RR41_RS13505 0.69 -0.1
2,822,298 - RR41_RS13505 0.78 +0.6
2,822,410 + RR41_RS13505 0.87 -0.7
2,822,482 - +1.9
2,822,563 + -1.3
2,822,585 + +0.6
2,822,585 + -0.9
2,822,594 + +0.3
2,822,682 + +1.9
2,822,683 - +1.3
2,822,683 - +0.9
2,822,683 - -0.1
2,822,734 - RR41_RS13510 0.11 -0.9
2,822,825 - RR41_RS13510 0.24 +0.3
2,822,896 - RR41_RS13510 0.34 +0.6
2,822,928 - RR41_RS13510 0.39 +0.3
2,822,952 + RR41_RS13510 0.42 -0.9
2,822,953 - RR41_RS13510 0.42 -1.1
2,822,953 - RR41_RS13510 0.42 +1.3
2,823,018 + RR41_RS13510 0.52 +0.9
2,823,067 + RR41_RS13510 0.59 +0.6
2,823,068 - RR41_RS13510 0.59 -0.6
2,823,222 - RR41_RS13510 0.81 -0.6
2,823,233 - RR41_RS13510 0.83 +0.4
2,823,233 - RR41_RS13510 0.83 +0.9
2,823,233 - RR41_RS13510 0.83 -0.1
2,823,257 - RR41_RS13510 0.86 -0.1
2,823,308 + +0.5
2,823,310 + -1.6
2,823,337 - +1.3
2,823,373 - -2.0
2,823,391 + -1.7
2,823,467 + -2.0
2,823,473 + -0.4

Or see this region's nucleotide sequence