Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS13495 and RR41_RS13500 are separated by 198 nucleotides RR41_RS13500 and RR41_RS13505 are separated by 158 nucleotides RR41_RS13505 and RR41_RS13510 are separated by 98 nucleotides RR41_RS13510 and RR41_RS13515 are separated by 154 nucleotides
RR41_RS13495: RR41_RS13495 - MBL fold metallo-hydrolase, at 2,819,432 to 2,820,451
_RS13495
RR41_RS13500: RR41_RS13500 - Rrf2 family transcriptional regulator, at 2,820,650 to 2,821,198
_RS13500
RR41_RS13505: RR41_RS13505 - FAD-dependent oxidoreductase, at 2,821,357 to 2,822,562
_RS13505
RR41_RS13510: RR41_RS13510 - type 1 glutamine amidotransferase domain-containing protein, at 2,822,661 to 2,823,353
_RS13510
RR41_RS13515: RR41_RS13515 - MerR family transcriptional regulator, at 2,823,508 to 2,823,924
_RS13515
Position (kb)
2821
2822
2823 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2820.484 kb on - strand at 2820.520 kb on + strand at 2820.657 kb on - strand at 2820.678 kb on - strand at 2821.054 kb on + strand, within RR41_RS13500 at 2821.117 kb on - strand, within RR41_RS13500 at 2821.553 kb on + strand, within RR41_RS13505 at 2821.554 kb on - strand, within RR41_RS13505 at 2821.554 kb on - strand, within RR41_RS13505 at 2821.556 kb on + strand, within RR41_RS13505 at 2821.658 kb on + strand, within RR41_RS13505 at 2821.659 kb on - strand, within RR41_RS13505 at 2821.751 kb on + strand, within RR41_RS13505 at 2821.822 kb on - strand, within RR41_RS13505 at 2821.822 kb on - strand, within RR41_RS13505 at 2822.189 kb on + strand, within RR41_RS13505 at 2822.298 kb on - strand, within RR41_RS13505 at 2822.410 kb on + strand, within RR41_RS13505 at 2822.482 kb on - strand at 2822.563 kb on + strand at 2822.585 kb on + strand at 2822.585 kb on + strand at 2822.594 kb on + strand at 2822.682 kb on + strand at 2822.683 kb on - strand at 2822.683 kb on - strand at 2822.683 kb on - strand at 2822.734 kb on - strand, within RR41_RS13510 at 2822.825 kb on - strand, within RR41_RS13510 at 2822.896 kb on - strand, within RR41_RS13510 at 2822.928 kb on - strand, within RR41_RS13510 at 2822.952 kb on + strand, within RR41_RS13510 at 2822.953 kb on - strand, within RR41_RS13510 at 2822.953 kb on - strand, within RR41_RS13510 at 2823.018 kb on + strand, within RR41_RS13510 at 2823.067 kb on + strand, within RR41_RS13510 at 2823.068 kb on - strand, within RR41_RS13510 at 2823.222 kb on - strand, within RR41_RS13510 at 2823.233 kb on - strand, within RR41_RS13510 at 2823.233 kb on - strand, within RR41_RS13510 at 2823.233 kb on - strand, within RR41_RS13510 at 2823.257 kb on - strand, within RR41_RS13510 at 2823.308 kb on + strand at 2823.310 kb on + strand at 2823.337 kb on - strand at 2823.373 kb on - strand at 2823.391 kb on + strand at 2823.467 kb on + strand at 2823.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 2,820,484 - +0.3 2,820,520 + -0.4 2,820,657 - +0.3 2,820,678 - -0.0 2,821,054 + RR41_RS13500 0.74 -0.9 2,821,117 - RR41_RS13500 0.85 +0.9 2,821,553 + RR41_RS13505 0.16 +1.9 2,821,554 - RR41_RS13505 0.16 -0.7 2,821,554 - RR41_RS13505 0.16 -1.1 2,821,556 + RR41_RS13505 0.17 +3.2 2,821,658 + RR41_RS13505 0.25 -0.9 2,821,659 - RR41_RS13505 0.25 -1.1 2,821,751 + RR41_RS13505 0.33 -1.3 2,821,822 - RR41_RS13505 0.39 -1.1 2,821,822 - RR41_RS13505 0.39 +0.9 2,822,189 + RR41_RS13505 0.69 -0.1 2,822,298 - RR41_RS13505 0.78 +0.6 2,822,410 + RR41_RS13505 0.87 -0.7 2,822,482 - +1.9 2,822,563 + -1.3 2,822,585 + +0.6 2,822,585 + -0.9 2,822,594 + +0.3 2,822,682 + +1.9 2,822,683 - +1.3 2,822,683 - +0.9 2,822,683 - -0.1 2,822,734 - RR41_RS13510 0.11 -0.9 2,822,825 - RR41_RS13510 0.24 +0.3 2,822,896 - RR41_RS13510 0.34 +0.6 2,822,928 - RR41_RS13510 0.39 +0.3 2,822,952 + RR41_RS13510 0.42 -0.9 2,822,953 - RR41_RS13510 0.42 -1.1 2,822,953 - RR41_RS13510 0.42 +1.3 2,823,018 + RR41_RS13510 0.52 +0.9 2,823,067 + RR41_RS13510 0.59 +0.6 2,823,068 - RR41_RS13510 0.59 -0.6 2,823,222 - RR41_RS13510 0.81 -0.6 2,823,233 - RR41_RS13510 0.83 +0.4 2,823,233 - RR41_RS13510 0.83 +0.9 2,823,233 - RR41_RS13510 0.83 -0.1 2,823,257 - RR41_RS13510 0.86 -0.1 2,823,308 + +0.5 2,823,310 + -1.6 2,823,337 - +1.3 2,823,373 - -2.0 2,823,391 + -1.7 2,823,467 + -2.0 2,823,473 + -0.4
Or see this region's nucleotide sequence