Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS13075

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS13075 and RR41_RS13080 are separated by 166 nucleotidesRR41_RS13080 and RR41_RS13085 are separated by 8 nucleotides RR41_RS13075: RR41_RS13075 - hypothetical protein, at 2,723,580 to 2,723,816 _RS13075 RR41_RS13080: RR41_RS13080 - uracil-DNA glycosylase family protein, at 2,723,983 to 2,724,570 _RS13080 RR41_RS13085: RR41_RS13085 - phospholipase D-like domain-containing protein, at 2,724,579 to 2,725,436 _RS13085 Position (kb) 2723 2724Strain fitness (log2 ratio) -1 0 1 2 3at 2722.686 kb on + strandat 2722.692 kb on + strandat 2722.698 kb on + strandat 2722.903 kb on - strandat 2722.947 kb on + strandat 2723.018 kb on - strandat 2723.020 kb on - strandat 2723.092 kb on + strandat 2723.167 kb on + strandat 2723.202 kb on - strandat 2723.347 kb on + strandat 2723.426 kb on - strandat 2723.441 kb on + strandat 2723.557 kb on - strandat 2723.622 kb on - strand, within RR41_RS13075at 2723.753 kb on - strand, within RR41_RS13075at 2723.766 kb on - strand, within RR41_RS13075at 2724.076 kb on - strand, within RR41_RS13080at 2724.095 kb on - strand, within RR41_RS13080at 2724.257 kb on + strand, within RR41_RS13080at 2724.439 kb on - strand, within RR41_RS13080at 2724.474 kb on - strand, within RR41_RS13080at 2724.474 kb on - strand, within RR41_RS13080at 2724.503 kb on - strand, within RR41_RS13080at 2724.605 kb on - strandat 2724.702 kb on - strand, within RR41_RS13085at 2724.717 kb on - strand, within RR41_RS13085at 2724.720 kb on + strand, within RR41_RS13085at 2724.738 kb on + strand, within RR41_RS13085at 2724.739 kb on - strand, within RR41_RS13085at 2724.760 kb on - strand, within RR41_RS13085at 2724.764 kb on + strand, within RR41_RS13085

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,722,686 + -0.4
2,722,692 + -0.4
2,722,698 + -0.6
2,722,903 - +1.3
2,722,947 + +1.0
2,723,018 - +0.4
2,723,020 - -0.2
2,723,092 + -1.5
2,723,167 + +2.0
2,723,202 - +0.0
2,723,347 + -0.0
2,723,426 - +2.4
2,723,441 + +0.5
2,723,557 - +2.5
2,723,622 - RR41_RS13075 0.18 -1.5
2,723,753 - RR41_RS13075 0.73 -0.3
2,723,766 - RR41_RS13075 0.78 -1.0
2,724,076 - RR41_RS13080 0.16 -0.6
2,724,095 - RR41_RS13080 0.19 -1.0
2,724,257 + RR41_RS13080 0.47 -0.4
2,724,439 - RR41_RS13080 0.78 -1.0
2,724,474 - RR41_RS13080 0.84 +0.5
2,724,474 - RR41_RS13080 0.84 +0.7
2,724,503 - RR41_RS13080 0.88 +3.0
2,724,605 - -1.0
2,724,702 - RR41_RS13085 0.14 -0.4
2,724,717 - RR41_RS13085 0.16 -1.6
2,724,720 + RR41_RS13085 0.16 +1.1
2,724,738 + RR41_RS13085 0.19 -1.4
2,724,739 - RR41_RS13085 0.19 -0.4
2,724,760 - RR41_RS13085 0.21 +1.7
2,724,764 + RR41_RS13085 0.22 +1.1

Or see this region's nucleotide sequence