Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS12280 and RR41_RS12285 are separated by 24 nucleotides RR41_RS12285 and RR41_RS12290 are separated by 152 nucleotides RR41_RS12290 and RR41_RS12295 are separated by 79 nucleotides RR41_RS12295 and RR41_RS12300 are separated by 74 nucleotides
RR41_RS12280: RR41_RS12280 - ribonuclease E activity regulator RraA, at 2,556,375 to 2,556,881
_RS12280
RR41_RS12285: RR41_RS12285 - glutathione S-transferase N-terminal domain-containing protein, at 2,556,906 to 2,557,688
_RS12285
RR41_RS12290: RR41_RS12290 - Dyp-type peroxidase, at 2,557,841 to 2,558,773
_RS12290
RR41_RS12295: RR41_RS12295 - hypothetical protein, at 2,558,853 to 2,559,209
_RS12295
RR41_RS12300: RR41_RS12300 - IS256-like element ISAba26 family transposase, at 2,559,284 to 2,560,492
_RS12300
Position (kb)
2557
2558
2559 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2556.843 kb on - strand at 2556.880 kb on - strand at 2556.983 kb on + strand at 2557.024 kb on - strand, within RR41_RS12285 at 2557.136 kb on - strand, within RR41_RS12285 at 2557.201 kb on + strand, within RR41_RS12285 at 2557.240 kb on - strand, within RR41_RS12285 at 2557.243 kb on - strand, within RR41_RS12285 at 2557.247 kb on + strand, within RR41_RS12285 at 2557.297 kb on - strand, within RR41_RS12285 at 2557.322 kb on - strand, within RR41_RS12285 at 2557.383 kb on - strand, within RR41_RS12285 at 2557.394 kb on - strand, within RR41_RS12285 at 2557.426 kb on + strand, within RR41_RS12285 at 2557.429 kb on + strand, within RR41_RS12285 at 2557.438 kb on + strand, within RR41_RS12285 at 2557.456 kb on + strand, within RR41_RS12285 at 2557.658 kb on - strand at 2557.678 kb on - strand at 2557.799 kb on - strand at 2557.840 kb on + strand at 2557.885 kb on - strand at 2557.885 kb on - strand at 2557.885 kb on - strand at 2558.002 kb on + strand, within RR41_RS12290 at 2558.013 kb on + strand, within RR41_RS12290 at 2558.105 kb on + strand, within RR41_RS12290 at 2558.179 kb on - strand, within RR41_RS12290 at 2558.186 kb on - strand, within RR41_RS12290 at 2558.212 kb on - strand, within RR41_RS12290 at 2558.212 kb on - strand, within RR41_RS12290 at 2558.500 kb on + strand, within RR41_RS12290 at 2558.506 kb on - strand, within RR41_RS12290 at 2558.591 kb on + strand, within RR41_RS12290 at 2558.691 kb on + strand at 2558.724 kb on + strand at 2558.790 kb on + strand at 2558.797 kb on + strand at 2559.040 kb on + strand, within RR41_RS12295 at 2559.184 kb on - strand at 2559.235 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 2,556,843 - -0.1 2,556,880 - +1.9 2,556,983 + -0.1 2,557,024 - RR41_RS12285 0.15 +0.9 2,557,136 - RR41_RS12285 0.29 -0.1 2,557,201 + RR41_RS12285 0.38 -0.4 2,557,240 - RR41_RS12285 0.43 +0.7 2,557,243 - RR41_RS12285 0.43 +1.9 2,557,247 + RR41_RS12285 0.44 -0.7 2,557,297 - RR41_RS12285 0.50 -0.2 2,557,322 - RR41_RS12285 0.53 -0.4 2,557,383 - RR41_RS12285 0.61 -1.1 2,557,394 - RR41_RS12285 0.62 +0.3 2,557,426 + RR41_RS12285 0.66 +0.9 2,557,429 + RR41_RS12285 0.67 -0.0 2,557,438 + RR41_RS12285 0.68 +0.6 2,557,456 + RR41_RS12285 0.70 -0.9 2,557,658 - +0.7 2,557,678 - -0.9 2,557,799 - +0.3 2,557,840 + +0.9 2,557,885 - +0.9 2,557,885 - +0.3 2,557,885 - -0.4 2,558,002 + RR41_RS12290 0.17 -0.7 2,558,013 + RR41_RS12290 0.18 +2.5 2,558,105 + RR41_RS12290 0.28 -1.1 2,558,179 - RR41_RS12290 0.36 -1.1 2,558,186 - RR41_RS12290 0.37 +1.5 2,558,212 - RR41_RS12290 0.40 -0.1 2,558,212 - RR41_RS12290 0.40 -1.0 2,558,500 + RR41_RS12290 0.71 -0.5 2,558,506 - RR41_RS12290 0.71 -0.4 2,558,591 + RR41_RS12290 0.80 -0.7 2,558,691 + -1.8 2,558,724 + -1.1 2,558,790 + -1.1 2,558,797 + -0.7 2,559,040 + RR41_RS12295 0.52 -0.1 2,559,184 - +1.3 2,559,235 - +1.6
Or see this region's nucleotide sequence