Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS12290

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS12280 and RR41_RS12285 are separated by 24 nucleotidesRR41_RS12285 and RR41_RS12290 are separated by 152 nucleotidesRR41_RS12290 and RR41_RS12295 are separated by 79 nucleotidesRR41_RS12295 and RR41_RS12300 are separated by 74 nucleotides RR41_RS12280: RR41_RS12280 - ribonuclease E activity regulator RraA, at 2,556,375 to 2,556,881 _RS12280 RR41_RS12285: RR41_RS12285 - glutathione S-transferase N-terminal domain-containing protein, at 2,556,906 to 2,557,688 _RS12285 RR41_RS12290: RR41_RS12290 - Dyp-type peroxidase, at 2,557,841 to 2,558,773 _RS12290 RR41_RS12295: RR41_RS12295 - hypothetical protein, at 2,558,853 to 2,559,209 _RS12295 RR41_RS12300: RR41_RS12300 - IS256-like element ISAba26 family transposase, at 2,559,284 to 2,560,492 _RS12300 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -2 -1 0 1 2at 2556.843 kb on - strandat 2556.880 kb on - strandat 2556.983 kb on + strandat 2557.024 kb on - strand, within RR41_RS12285at 2557.136 kb on - strand, within RR41_RS12285at 2557.201 kb on + strand, within RR41_RS12285at 2557.240 kb on - strand, within RR41_RS12285at 2557.243 kb on - strand, within RR41_RS12285at 2557.247 kb on + strand, within RR41_RS12285at 2557.297 kb on - strand, within RR41_RS12285at 2557.322 kb on - strand, within RR41_RS12285at 2557.383 kb on - strand, within RR41_RS12285at 2557.394 kb on - strand, within RR41_RS12285at 2557.426 kb on + strand, within RR41_RS12285at 2557.429 kb on + strand, within RR41_RS12285at 2557.438 kb on + strand, within RR41_RS12285at 2557.456 kb on + strand, within RR41_RS12285at 2557.658 kb on - strandat 2557.678 kb on - strandat 2557.799 kb on - strandat 2557.840 kb on + strandat 2557.885 kb on - strandat 2557.885 kb on - strandat 2557.885 kb on - strandat 2558.002 kb on + strand, within RR41_RS12290at 2558.013 kb on + strand, within RR41_RS12290at 2558.105 kb on + strand, within RR41_RS12290at 2558.179 kb on - strand, within RR41_RS12290at 2558.186 kb on - strand, within RR41_RS12290at 2558.212 kb on - strand, within RR41_RS12290at 2558.212 kb on - strand, within RR41_RS12290at 2558.500 kb on + strand, within RR41_RS12290at 2558.506 kb on - strand, within RR41_RS12290at 2558.591 kb on + strand, within RR41_RS12290at 2558.691 kb on + strandat 2558.724 kb on + strandat 2558.790 kb on + strandat 2558.797 kb on + strandat 2559.040 kb on + strand, within RR41_RS12295at 2559.184 kb on - strandat 2559.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,556,843 - -0.1
2,556,880 - +1.9
2,556,983 + -0.1
2,557,024 - RR41_RS12285 0.15 +0.9
2,557,136 - RR41_RS12285 0.29 -0.1
2,557,201 + RR41_RS12285 0.38 -0.4
2,557,240 - RR41_RS12285 0.43 +0.7
2,557,243 - RR41_RS12285 0.43 +1.9
2,557,247 + RR41_RS12285 0.44 -0.7
2,557,297 - RR41_RS12285 0.50 -0.2
2,557,322 - RR41_RS12285 0.53 -0.4
2,557,383 - RR41_RS12285 0.61 -1.1
2,557,394 - RR41_RS12285 0.62 +0.3
2,557,426 + RR41_RS12285 0.66 +0.9
2,557,429 + RR41_RS12285 0.67 -0.0
2,557,438 + RR41_RS12285 0.68 +0.6
2,557,456 + RR41_RS12285 0.70 -0.9
2,557,658 - +0.7
2,557,678 - -0.9
2,557,799 - +0.3
2,557,840 + +0.9
2,557,885 - +0.9
2,557,885 - +0.3
2,557,885 - -0.4
2,558,002 + RR41_RS12290 0.17 -0.7
2,558,013 + RR41_RS12290 0.18 +2.5
2,558,105 + RR41_RS12290 0.28 -1.1
2,558,179 - RR41_RS12290 0.36 -1.1
2,558,186 - RR41_RS12290 0.37 +1.5
2,558,212 - RR41_RS12290 0.40 -0.1
2,558,212 - RR41_RS12290 0.40 -1.0
2,558,500 + RR41_RS12290 0.71 -0.5
2,558,506 - RR41_RS12290 0.71 -0.4
2,558,591 + RR41_RS12290 0.80 -0.7
2,558,691 + -1.8
2,558,724 + -1.1
2,558,790 + -1.1
2,558,797 + -0.7
2,559,040 + RR41_RS12295 0.52 -0.1
2,559,184 - +1.3
2,559,235 - +1.6

Or see this region's nucleotide sequence