Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS11715

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS11710 and RR41_RS11715 are separated by 274 nucleotidesRR41_RS11715 and RR41_RS11720 are separated by 197 nucleotidesRR41_RS11720 and RR41_RS11725 are separated by 157 nucleotides RR41_RS11710: RR41_RS11710 - TetR/AcrR family transcriptional regulator, at 2,446,124 to 2,446,684 _RS11710 RR41_RS11715: RR41_RS11715 - hypothetical protein, at 2,446,959 to 2,447,822 _RS11715 RR41_RS11720: RR41_RS11720 - tRNA-Ile, at 2,448,020 to 2,448,096 _RS11720 RR41_RS11725: RR41_RS11725 - integrase family protein, at 2,448,254 to 2,449,486 _RS11725 Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2446.443 kb on - strand, within RR41_RS11710at 2446.561 kb on - strand, within RR41_RS11710at 2446.789 kb on - strandat 2447.202 kb on - strand, within RR41_RS11715at 2447.212 kb on + strand, within RR41_RS11715at 2447.357 kb on + strand, within RR41_RS11715at 2447.368 kb on - strand, within RR41_RS11715at 2447.496 kb on + strand, within RR41_RS11715at 2447.497 kb on - strand, within RR41_RS11715at 2447.516 kb on - strand, within RR41_RS11715at 2447.519 kb on - strand, within RR41_RS11715at 2447.525 kb on - strand, within RR41_RS11715at 2447.607 kb on + strand, within RR41_RS11715at 2447.851 kb on - strandat 2447.852 kb on + strandat 2447.855 kb on - strandat 2447.949 kb on + strandat 2447.981 kb on - strandat 2448.215 kb on + strandat 2448.276 kb on + strandat 2448.357 kb on + strandat 2448.594 kb on + strand, within RR41_RS11725at 2448.667 kb on - strand, within RR41_RS11725at 2448.737 kb on - strand, within RR41_RS11725

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,446,443 - RR41_RS11710 0.57 -1.3
2,446,561 - RR41_RS11710 0.78 +0.9
2,446,789 - -0.1
2,447,202 - RR41_RS11715 0.28 -0.4
2,447,212 + RR41_RS11715 0.29 -0.5
2,447,357 + RR41_RS11715 0.46 -1.8
2,447,368 - RR41_RS11715 0.47 -0.8
2,447,496 + RR41_RS11715 0.62 -1.1
2,447,497 - RR41_RS11715 0.62 -1.7
2,447,516 - RR41_RS11715 0.64 +0.6
2,447,519 - RR41_RS11715 0.65 -0.8
2,447,525 - RR41_RS11715 0.66 -1.0
2,447,607 + RR41_RS11715 0.75 -1.4
2,447,851 - -0.6
2,447,852 + -1.3
2,447,855 - +0.3
2,447,949 + -1.3
2,447,981 - -0.7
2,448,215 + +0.9
2,448,276 + +0.0
2,448,357 + +1.9
2,448,594 + RR41_RS11725 0.28 -1.1
2,448,667 - RR41_RS11725 0.33 +1.7
2,448,737 - RR41_RS11725 0.39 +3.2

Or see this region's nucleotide sequence