Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS11705

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS11695 and RR41_RS11700 are separated by 30 nucleotidesRR41_RS11700 and RR41_RS11705 are separated by 162 nucleotidesRR41_RS11705 and RR41_RS11710 are separated by 185 nucleotides RR41_RS11695: RR41_RS11695 - Lrp/AsnC family transcriptional regulator, at 2,443,980 to 2,444,450 _RS11695 RR41_RS11700: RR41_RS11700 - YebC/PmpR family DNA-binding transcriptional regulator, at 2,444,481 to 2,445,230 _RS11700 RR41_RS11705: RR41_RS11705 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,445,393 to 2,445,938 _RS11705 RR41_RS11710: RR41_RS11710 - TetR/AcrR family transcriptional regulator, at 2,446,124 to 2,446,684 _RS11710 Position (kb) 2445 2446Strain fitness (log2 ratio) -1 0 1 2at 2444.421 kb on - strandat 2444.428 kb on - strandat 2444.637 kb on + strand, within RR41_RS11700at 2444.763 kb on + strand, within RR41_RS11700at 2445.148 kb on + strand, within RR41_RS11700at 2445.149 kb on - strand, within RR41_RS11700at 2445.200 kb on + strandat 2445.200 kb on + strandat 2445.333 kb on + strandat 2445.394 kb on + strandat 2445.418 kb on + strandat 2445.517 kb on + strand, within RR41_RS11705at 2445.525 kb on + strand, within RR41_RS11705at 2445.575 kb on + strand, within RR41_RS11705at 2445.624 kb on + strand, within RR41_RS11705at 2445.628 kb on - strand, within RR41_RS11705at 2445.677 kb on + strand, within RR41_RS11705at 2445.765 kb on + strand, within RR41_RS11705at 2445.770 kb on + strand, within RR41_RS11705at 2445.789 kb on + strand, within RR41_RS11705at 2445.956 kb on + strandat 2446.443 kb on - strand, within RR41_RS11710at 2446.561 kb on - strand, within RR41_RS11710at 2446.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,444,421 - +0.1
2,444,428 - +0.3
2,444,637 + RR41_RS11700 0.21 -0.4
2,444,763 + RR41_RS11700 0.38 +0.3
2,445,148 + RR41_RS11700 0.89 -0.7
2,445,149 - RR41_RS11700 0.89 +0.9
2,445,200 + +0.9
2,445,200 + -0.4
2,445,333 + +0.3
2,445,394 + -0.1
2,445,418 + +1.9
2,445,517 + RR41_RS11705 0.23 -1.6
2,445,525 + RR41_RS11705 0.24 -0.1
2,445,575 + RR41_RS11705 0.33 -0.2
2,445,624 + RR41_RS11705 0.42 -0.7
2,445,628 - RR41_RS11705 0.43 -1.3
2,445,677 + RR41_RS11705 0.52 -1.2
2,445,765 + RR41_RS11705 0.68 +0.9
2,445,770 + RR41_RS11705 0.69 +0.3
2,445,789 + RR41_RS11705 0.73 -1.4
2,445,956 + +0.3
2,446,443 - RR41_RS11710 0.57 -1.3
2,446,561 - RR41_RS11710 0.78 +0.9
2,446,789 - -0.1

Or see this region's nucleotide sequence