Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS11185

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS11175 and RR41_RS11180 are separated by 87 nucleotidesRR41_RS11180 and RR41_RS11185 are separated by 84 nucleotidesRR41_RS11185 and RR41_RS11190 are separated by 105 nucleotidesRR41_RS11190 and RR41_RS11195 are separated by 322 nucleotides RR41_RS11175: RR41_RS11175 - hypothetical protein, at 2,339,849 to 2,340,276 _RS11175 RR41_RS11180: RR41_RS11180 - hypothetical protein, at 2,340,364 to 2,340,585 _RS11180 RR41_RS11185: RR41_RS11185 - hypothetical protein, at 2,340,670 to 2,340,987 _RS11185 RR41_RS11190: RR41_RS11190 - hypothetical protein, at 2,341,093 to 2,341,314 _RS11190 RR41_RS11195: RR41_RS11195 - IS30 family transposase, at 2,341,637 to 2,342,662 _RS11195 Position (kb) 2340 2341Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2339.999 kb on - strand, within RR41_RS11175at 2340.175 kb on - strand, within RR41_RS11175at 2340.347 kb on + strandat 2340.359 kb on + strandat 2340.450 kb on - strand, within RR41_RS11180at 2340.480 kb on - strand, within RR41_RS11180at 2340.500 kb on + strand, within RR41_RS11180at 2340.565 kb on - strandat 2340.599 kb on - strandat 2340.617 kb on - strandat 2340.647 kb on + strandat 2340.648 kb on - strandat 2340.648 kb on - strandat 2340.648 kb on - strandat 2340.651 kb on + strandat 2340.651 kb on + strandat 2340.652 kb on - strandat 2340.671 kb on + strandat 2340.676 kb on - strandat 2340.739 kb on + strand, within RR41_RS11185at 2340.874 kb on + strand, within RR41_RS11185at 2340.935 kb on + strand, within RR41_RS11185at 2340.939 kb on + strand, within RR41_RS11185at 2341.022 kb on + strandat 2341.419 kb on + strandat 2341.481 kb on + strandat 2341.501 kb on + strandat 2341.501 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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2,339,999 - RR41_RS11175 0.35 +0.8
2,340,175 - RR41_RS11175 0.76 -0.2
2,340,347 + +1.2
2,340,359 + -1.4
2,340,450 - RR41_RS11180 0.39 -0.4
2,340,480 - RR41_RS11180 0.52 +3.4
2,340,500 + RR41_RS11180 0.61 +0.3
2,340,565 - -0.8
2,340,599 - +0.2
2,340,617 - +1.2
2,340,647 + +2.2
2,340,648 - +0.5
2,340,648 - +1.8
2,340,648 - -0.8
2,340,651 + +0.1
2,340,651 + -0.5
2,340,652 - +0.2
2,340,671 + +0.8
2,340,676 - -2.5
2,340,739 + RR41_RS11185 0.22 -0.8
2,340,874 + RR41_RS11185 0.64 -1.9
2,340,935 + RR41_RS11185 0.83 -1.5
2,340,939 + RR41_RS11185 0.85 +0.5
2,341,022 + -2.0
2,341,419 + -0.5
2,341,481 + -0.7
2,341,501 + -0.2
2,341,501 + -0.5

Or see this region's nucleotide sequence