Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS11175 and RR41_RS11180 are separated by 87 nucleotides RR41_RS11180 and RR41_RS11185 are separated by 84 nucleotides RR41_RS11185 and RR41_RS11190 are separated by 105 nucleotides RR41_RS11190 and RR41_RS11195 are separated by 322 nucleotides
RR41_RS11175: RR41_RS11175 - hypothetical protein, at 2,339,849 to 2,340,276
_RS11175
RR41_RS11180: RR41_RS11180 - hypothetical protein, at 2,340,364 to 2,340,585
_RS11180
RR41_RS11185: RR41_RS11185 - hypothetical protein, at 2,340,670 to 2,340,987
_RS11185
RR41_RS11190: RR41_RS11190 - hypothetical protein, at 2,341,093 to 2,341,314
_RS11190
RR41_RS11195: RR41_RS11195 - IS30 family transposase, at 2,341,637 to 2,342,662
_RS11195
Position (kb)
2340
2341 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2339.999 kb on - strand, within RR41_RS11175 at 2340.175 kb on - strand, within RR41_RS11175 at 2340.347 kb on + strand at 2340.359 kb on + strand at 2340.450 kb on - strand, within RR41_RS11180 at 2340.480 kb on - strand, within RR41_RS11180 at 2340.500 kb on + strand, within RR41_RS11180 at 2340.565 kb on - strand at 2340.599 kb on - strand at 2340.617 kb on - strand at 2340.647 kb on + strand at 2340.648 kb on - strand at 2340.648 kb on - strand at 2340.648 kb on - strand at 2340.651 kb on + strand at 2340.651 kb on + strand at 2340.652 kb on - strand at 2340.671 kb on + strand at 2340.676 kb on - strand at 2340.739 kb on + strand, within RR41_RS11185 at 2340.874 kb on + strand, within RR41_RS11185 at 2340.935 kb on + strand, within RR41_RS11185 at 2340.939 kb on + strand, within RR41_RS11185 at 2341.022 kb on + strand at 2341.419 kb on + strand at 2341.481 kb on + strand at 2341.501 kb on + strand at 2341.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 2,339,999 - RR41_RS11175 0.35 +0.8 2,340,175 - RR41_RS11175 0.76 -0.2 2,340,347 + +1.2 2,340,359 + -1.4 2,340,450 - RR41_RS11180 0.39 -0.4 2,340,480 - RR41_RS11180 0.52 +3.4 2,340,500 + RR41_RS11180 0.61 +0.3 2,340,565 - -0.8 2,340,599 - +0.2 2,340,617 - +1.2 2,340,647 + +2.2 2,340,648 - +0.5 2,340,648 - +1.8 2,340,648 - -0.8 2,340,651 + +0.1 2,340,651 + -0.5 2,340,652 - +0.2 2,340,671 + +0.8 2,340,676 - -2.5 2,340,739 + RR41_RS11185 0.22 -0.8 2,340,874 + RR41_RS11185 0.64 -1.9 2,340,935 + RR41_RS11185 0.83 -1.5 2,340,939 + RR41_RS11185 0.85 +0.5 2,341,022 + -2.0 2,341,419 + -0.5 2,341,481 + -0.7 2,341,501 + -0.2 2,341,501 + -0.5
Or see this region's nucleotide sequence