Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS10680 and RR41_RS20060 are separated by 3 nucleotides RR41_RS20060 and RR41_RS10695 are separated by 3 nucleotides RR41_RS10695 and RR41_RS10700 are separated by 16 nucleotides
RR41_RS10680: RR41_RS10680 - hypothetical protein, at 2,233,346 to 2,234,122
_RS10680
RR41_RS20060: RR41_RS20060 - ABC transporter ATP-binding protein, at 2,234,126 to 2,234,904
_RS20060
RR41_RS10695: RR41_RS10695 - hypothetical protein, at 2,234,908 to 2,235,690
_RS10695
RR41_RS10700: RR41_RS10700 - sel1 repeat family protein, at 2,235,707 to 2,236,612
_RS10700
Position (kb)
2234
2235
2236 Strain fitness (log2 ratio)
-1
0
1
2 at 2234.263 kb on + strand, within RR41_RS20060 at 2234.475 kb on + strand, within RR41_RS20060 at 2234.480 kb on + strand, within RR41_RS20060 at 2234.482 kb on + strand, within RR41_RS20060 at 2234.489 kb on + strand, within RR41_RS20060 at 2234.654 kb on + strand, within RR41_RS20060 at 2234.689 kb on + strand, within RR41_RS20060 at 2234.906 kb on + strand at 2234.929 kb on - strand at 2235.069 kb on + strand, within RR41_RS10695 at 2235.071 kb on + strand, within RR41_RS10695 at 2235.122 kb on + strand, within RR41_RS10695 at 2235.260 kb on + strand, within RR41_RS10695 at 2235.262 kb on + strand, within RR41_RS10695 at 2235.382 kb on - strand, within RR41_RS10695 at 2235.646 kb on - strand at 2235.716 kb on - strand at 2235.742 kb on - strand at 2235.806 kb on - strand, within RR41_RS10700 at 2235.822 kb on - strand, within RR41_RS10700 at 2235.823 kb on + strand, within RR41_RS10700 at 2235.886 kb on - strand, within RR41_RS10700 at 2235.892 kb on + strand, within RR41_RS10700 at 2235.893 kb on - strand, within RR41_RS10700 at 2235.893 kb on - strand, within RR41_RS10700 at 2236.094 kb on - strand, within RR41_RS10700 at 2236.096 kb on - strand, within RR41_RS10700 at 2236.119 kb on - strand, within RR41_RS10700 at 2236.169 kb on - strand, within RR41_RS10700 at 2236.185 kb on + strand, within RR41_RS10700 at 2236.185 kb on + strand, within RR41_RS10700 at 2236.192 kb on - strand, within RR41_RS10700 at 2236.410 kb on + strand, within RR41_RS10700 at 2236.411 kb on - strand, within RR41_RS10700 at 2236.413 kb on + strand, within RR41_RS10700 at 2236.440 kb on - strand, within RR41_RS10700 at 2236.523 kb on - strand at 2236.525 kb on + strand at 2236.528 kb on - strand at 2236.543 kb on + strand at 2236.544 kb on - strand at 2236.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 2,234,263 + RR41_RS20060 0.18 +0.3 2,234,475 + RR41_RS20060 0.45 -0.2 2,234,480 + RR41_RS20060 0.45 -1.7 2,234,482 + RR41_RS20060 0.46 +0.2 2,234,489 + RR41_RS20060 0.47 +0.2 2,234,654 + RR41_RS20060 0.68 +0.2 2,234,689 + RR41_RS20060 0.72 -0.0 2,234,906 + -0.4 2,234,929 - -1.0 2,235,069 + RR41_RS10695 0.21 +0.8 2,235,071 + RR41_RS10695 0.21 -0.8 2,235,122 + RR41_RS10695 0.27 -1.2 2,235,260 + RR41_RS10695 0.45 -1.0 2,235,262 + RR41_RS10695 0.45 -0.1 2,235,382 - RR41_RS10695 0.61 -1.0 2,235,646 - +0.1 2,235,716 - -0.8 2,235,742 - -0.1 2,235,806 - RR41_RS10700 0.11 +1.0 2,235,822 - RR41_RS10700 0.13 +0.3 2,235,823 + RR41_RS10700 0.13 -0.8 2,235,886 - RR41_RS10700 0.20 -0.2 2,235,892 + RR41_RS10700 0.20 +1.5 2,235,893 - RR41_RS10700 0.21 -1.5 2,235,893 - RR41_RS10700 0.21 +0.8 2,236,094 - RR41_RS10700 0.43 +0.5 2,236,096 - RR41_RS10700 0.43 -1.2 2,236,119 - RR41_RS10700 0.45 +0.9 2,236,169 - RR41_RS10700 0.51 -0.2 2,236,185 + RR41_RS10700 0.53 +0.2 2,236,185 + RR41_RS10700 0.53 -0.5 2,236,192 - RR41_RS10700 0.54 +1.0 2,236,410 + RR41_RS10700 0.78 +0.5 2,236,411 - RR41_RS10700 0.78 -1.0 2,236,413 + RR41_RS10700 0.78 +1.9 2,236,440 - RR41_RS10700 0.81 -1.2 2,236,523 - +0.4 2,236,525 + -1.2 2,236,528 - +1.4 2,236,543 + +0.5 2,236,544 - -0.9 2,236,683 + -1.0
Or see this region's nucleotide sequence