Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS10695

Experiment: MHII_biocarbonate_serum_Chelated; 35C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR41_RS10680 and RR41_RS20060 are separated by 3 nucleotidesRR41_RS20060 and RR41_RS10695 are separated by 3 nucleotidesRR41_RS10695 and RR41_RS10700 are separated by 16 nucleotides RR41_RS10680: RR41_RS10680 - hypothetical protein, at 2,233,346 to 2,234,122 _RS10680 RR41_RS20060: RR41_RS20060 - ABC transporter ATP-binding protein, at 2,234,126 to 2,234,904 _RS20060 RR41_RS10695: RR41_RS10695 - hypothetical protein, at 2,234,908 to 2,235,690 _RS10695 RR41_RS10700: RR41_RS10700 - sel1 repeat family protein, at 2,235,707 to 2,236,612 _RS10700 Position (kb) 2234 2235 2236Strain fitness (log2 ratio) -1 0 1 2at 2234.263 kb on + strand, within RR41_RS20060at 2234.475 kb on + strand, within RR41_RS20060at 2234.480 kb on + strand, within RR41_RS20060at 2234.482 kb on + strand, within RR41_RS20060at 2234.489 kb on + strand, within RR41_RS20060at 2234.654 kb on + strand, within RR41_RS20060at 2234.689 kb on + strand, within RR41_RS20060at 2234.906 kb on + strandat 2234.929 kb on - strandat 2235.069 kb on + strand, within RR41_RS10695at 2235.071 kb on + strand, within RR41_RS10695at 2235.122 kb on + strand, within RR41_RS10695at 2235.260 kb on + strand, within RR41_RS10695at 2235.262 kb on + strand, within RR41_RS10695at 2235.382 kb on - strand, within RR41_RS10695at 2235.646 kb on - strandat 2235.716 kb on - strandat 2235.742 kb on - strandat 2235.806 kb on - strand, within RR41_RS10700at 2235.822 kb on - strand, within RR41_RS10700at 2235.823 kb on + strand, within RR41_RS10700at 2235.886 kb on - strand, within RR41_RS10700at 2235.892 kb on + strand, within RR41_RS10700at 2235.893 kb on - strand, within RR41_RS10700at 2235.893 kb on - strand, within RR41_RS10700at 2236.094 kb on - strand, within RR41_RS10700at 2236.096 kb on - strand, within RR41_RS10700at 2236.119 kb on - strand, within RR41_RS10700at 2236.169 kb on - strand, within RR41_RS10700at 2236.185 kb on + strand, within RR41_RS10700at 2236.185 kb on + strand, within RR41_RS10700at 2236.192 kb on - strand, within RR41_RS10700at 2236.410 kb on + strand, within RR41_RS10700at 2236.411 kb on - strand, within RR41_RS10700at 2236.413 kb on + strand, within RR41_RS10700at 2236.440 kb on - strand, within RR41_RS10700at 2236.523 kb on - strandat 2236.525 kb on + strandat 2236.528 kb on - strandat 2236.543 kb on + strandat 2236.544 kb on - strandat 2236.683 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
remove
2,234,263 + RR41_RS20060 0.18 +0.3
2,234,475 + RR41_RS20060 0.45 -0.2
2,234,480 + RR41_RS20060 0.45 -1.7
2,234,482 + RR41_RS20060 0.46 +0.2
2,234,489 + RR41_RS20060 0.47 +0.2
2,234,654 + RR41_RS20060 0.68 +0.2
2,234,689 + RR41_RS20060 0.72 -0.0
2,234,906 + -0.4
2,234,929 - -1.0
2,235,069 + RR41_RS10695 0.21 +0.8
2,235,071 + RR41_RS10695 0.21 -0.8
2,235,122 + RR41_RS10695 0.27 -1.2
2,235,260 + RR41_RS10695 0.45 -1.0
2,235,262 + RR41_RS10695 0.45 -0.1
2,235,382 - RR41_RS10695 0.61 -1.0
2,235,646 - +0.1
2,235,716 - -0.8
2,235,742 - -0.1
2,235,806 - RR41_RS10700 0.11 +1.0
2,235,822 - RR41_RS10700 0.13 +0.3
2,235,823 + RR41_RS10700 0.13 -0.8
2,235,886 - RR41_RS10700 0.20 -0.2
2,235,892 + RR41_RS10700 0.20 +1.5
2,235,893 - RR41_RS10700 0.21 -1.5
2,235,893 - RR41_RS10700 0.21 +0.8
2,236,094 - RR41_RS10700 0.43 +0.5
2,236,096 - RR41_RS10700 0.43 -1.2
2,236,119 - RR41_RS10700 0.45 +0.9
2,236,169 - RR41_RS10700 0.51 -0.2
2,236,185 + RR41_RS10700 0.53 +0.2
2,236,185 + RR41_RS10700 0.53 -0.5
2,236,192 - RR41_RS10700 0.54 +1.0
2,236,410 + RR41_RS10700 0.78 +0.5
2,236,411 - RR41_RS10700 0.78 -1.0
2,236,413 + RR41_RS10700 0.78 +1.9
2,236,440 - RR41_RS10700 0.81 -1.2
2,236,523 - +0.4
2,236,525 + -1.2
2,236,528 - +1.4
2,236,543 + +0.5
2,236,544 - -0.9
2,236,683 + -1.0

Or see this region's nucleotide sequence