Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS07725

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS07710 and RR41_RS07715 are separated by 8 nucleotidesRR41_RS07715 and RR41_RS07720 overlap by 29 nucleotidesRR41_RS07720 and RR41_RS07725 are separated by 1 nucleotidesRR41_RS07725 and RR41_RS07730 are separated by 1 nucleotidesRR41_RS07730 and RR41_RS07735 are separated by 108 nucleotidesRR41_RS07735 and RR41_RS07740 overlap by 26 nucleotides RR41_RS07710: RR41_RS07710 - glutamate 5-kinase, at 1,594,351 to 1,594,719 _RS07710 RR41_RS07715: RR41_RS07715 - hypothetical protein, at 1,594,728 to 1,595,135 _RS07715 RR41_RS07720: RR41_RS07720 - hypothetical protein, at 1,595,107 to 1,595,475 _RS07720 RR41_RS07725: RR41_RS07725 - hypothetical protein, at 1,595,477 to 1,595,875 _RS07725 RR41_RS07730: RR41_RS07730 - hypothetical protein, at 1,595,877 to 1,596,095 _RS07730 RR41_RS07735: RR41_RS07735 - SH3 domain-containing protein, at 1,596,204 to 1,596,461 _RS07735 RR41_RS07740: RR41_RS07740 - phage tail tape measure protein, at 1,596,436 to 1,598,766 _RS07740 Position (kb) 1595 1596Strain fitness (log2 ratio) -2 -1 0 1 2at 1594.477 kb on + strand, within RR41_RS07710at 1594.478 kb on - strand, within RR41_RS07710at 1594.528 kb on + strand, within RR41_RS07710at 1594.528 kb on + strand, within RR41_RS07710at 1594.601 kb on + strand, within RR41_RS07710at 1594.760 kb on + strandat 1594.785 kb on + strand, within RR41_RS07715at 1594.881 kb on - strand, within RR41_RS07715at 1594.902 kb on + strand, within RR41_RS07715at 1595.082 kb on + strand, within RR41_RS07715at 1595.083 kb on - strand, within RR41_RS07715at 1595.216 kb on + strand, within RR41_RS07720at 1595.254 kb on - strand, within RR41_RS07720at 1595.359 kb on + strand, within RR41_RS07720at 1595.432 kb on - strand, within RR41_RS07720at 1595.510 kb on - strandat 1595.510 kb on - strandat 1595.521 kb on + strand, within RR41_RS07725at 1595.656 kb on + strand, within RR41_RS07725at 1595.656 kb on + strand, within RR41_RS07725at 1595.666 kb on - strand, within RR41_RS07725at 1595.846 kb on - strandat 1595.876 kb on + strandat 1595.989 kb on + strand, within RR41_RS07730at 1595.989 kb on + strand, within RR41_RS07730at 1596.010 kb on + strand, within RR41_RS07730at 1596.067 kb on + strand, within RR41_RS07730at 1596.068 kb on - strand, within RR41_RS07730at 1596.145 kb on - strandat 1596.145 kb on - strandat 1596.145 kb on - strandat 1596.198 kb on + strandat 1596.332 kb on + strand, within RR41_RS07735at 1596.350 kb on + strand, within RR41_RS07735at 1596.372 kb on - strand, within RR41_RS07735at 1596.394 kb on + strand, within RR41_RS07735at 1596.398 kb on - strand, within RR41_RS07735at 1596.505 kb on - strandat 1596.605 kb on + strandat 1596.759 kb on + strand, within RR41_RS07740at 1596.762 kb on + strand, within RR41_RS07740at 1596.773 kb on - strand, within RR41_RS07740at 1596.793 kb on + strand, within RR41_RS07740at 1596.824 kb on + strand, within RR41_RS07740at 1596.831 kb on + strand, within RR41_RS07740at 1596.832 kb on - strand, within RR41_RS07740

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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1,594,477 + RR41_RS07710 0.34 +0.2
1,594,478 - RR41_RS07710 0.34 +0.7
1,594,528 + RR41_RS07710 0.48 +0.7
1,594,528 + RR41_RS07710 0.48 -1.1
1,594,601 + RR41_RS07710 0.68 -0.8
1,594,760 + -0.1
1,594,785 + RR41_RS07715 0.14 -0.6
1,594,881 - RR41_RS07715 0.38 -0.1
1,594,902 + RR41_RS07715 0.43 -0.8
1,595,082 + RR41_RS07715 0.87 +0.2
1,595,083 - RR41_RS07715 0.87 +2.2
1,595,216 + RR41_RS07720 0.30 +1.7
1,595,254 - RR41_RS07720 0.40 +2.5
1,595,359 + RR41_RS07720 0.68 -1.1
1,595,432 - RR41_RS07720 0.88 +0.7
1,595,510 - -0.8
1,595,510 - +1.2
1,595,521 + RR41_RS07725 0.11 +0.4
1,595,656 + RR41_RS07725 0.45 -1.4
1,595,656 + RR41_RS07725 0.45 -1.6
1,595,666 - RR41_RS07725 0.47 +0.0
1,595,846 - +0.7
1,595,876 + +1.7
1,595,989 + RR41_RS07730 0.51 -0.6
1,595,989 + RR41_RS07730 0.51 -0.8
1,596,010 + RR41_RS07730 0.61 +0.2
1,596,067 + RR41_RS07730 0.87 -0.8
1,596,068 - RR41_RS07730 0.87 +0.3
1,596,145 - +0.7
1,596,145 - -2.0
1,596,145 - -1.7
1,596,198 + +0.1
1,596,332 + RR41_RS07735 0.50 -1.6
1,596,350 + RR41_RS07735 0.57 -1.6
1,596,372 - RR41_RS07735 0.65 +0.2
1,596,394 + RR41_RS07735 0.74 -0.6
1,596,398 - RR41_RS07735 0.75 +0.0
1,596,505 - -0.8
1,596,605 + +1.2
1,596,759 + RR41_RS07740 0.14 -1.2
1,596,762 + RR41_RS07740 0.14 +0.7
1,596,773 - RR41_RS07740 0.14 -1.4
1,596,793 + RR41_RS07740 0.15 -1.8
1,596,824 + RR41_RS07740 0.17 +1.7
1,596,831 + RR41_RS07740 0.17 +2.0
1,596,832 - RR41_RS07740 0.17 +0.7

Or see this region's nucleotide sequence