Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS07085

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS07075 and RR41_RS07080 are separated by 93 nucleotidesRR41_RS07080 and RR41_RS07085 are separated by 131 nucleotidesRR41_RS07085 and RR41_RS19280 are separated by 15 nucleotides RR41_RS07075: RR41_RS07075 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 1,471,747 to 1,472,691 _RS07075 RR41_RS07080: RR41_RS07080 - RNA chaperone Hfq, at 1,472,785 to 1,473,291 _RS07080 RR41_RS07085: RR41_RS07085 - DMT family transporter, at 1,473,423 to 1,474,007 _RS07085 RR41_RS19280: RR41_RS19280 - IS4-like element ISAba1 family transposase, at 1,474,023 to 1,475,113 _RS19280 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1472.453 kb on + strand, within RR41_RS07075at 1472.454 kb on - strand, within RR41_RS07075at 1472.472 kb on + strand, within RR41_RS07075at 1472.472 kb on + strand, within RR41_RS07075at 1472.472 kb on + strand, within RR41_RS07075at 1472.473 kb on - strand, within RR41_RS07075at 1472.473 kb on - strand, within RR41_RS07075at 1472.473 kb on - strand, within RR41_RS07075at 1472.473 kb on - strand, within RR41_RS07075at 1472.501 kb on + strand, within RR41_RS07075at 1472.598 kb on + strandat 1472.598 kb on + strandat 1472.599 kb on - strandat 1472.599 kb on - strandat 1472.599 kb on - strandat 1472.599 kb on - strandat 1472.624 kb on + strandat 1472.624 kb on + strandat 1472.625 kb on - strandat 1472.625 kb on - strandat 1472.641 kb on + strandat 1472.642 kb on - strandat 1472.716 kb on + strandat 1472.742 kb on + strandat 1473.289 kb on + strandat 1473.364 kb on + strandat 1473.365 kb on - strandat 1473.365 kb on - strandat 1473.409 kb on + strandat 1473.469 kb on + strandat 1473.528 kb on + strand, within RR41_RS07085at 1473.547 kb on + strand, within RR41_RS07085at 1473.552 kb on + strand, within RR41_RS07085at 1473.590 kb on - strand, within RR41_RS07085at 1473.596 kb on + strand, within RR41_RS07085at 1473.635 kb on - strand, within RR41_RS07085at 1473.660 kb on - strand, within RR41_RS07085at 1473.762 kb on - strand, within RR41_RS07085at 1473.908 kb on + strand, within RR41_RS07085at 1473.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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1,472,453 + RR41_RS07075 0.75 -1.2
1,472,454 - RR41_RS07075 0.75 -1.2
1,472,472 + RR41_RS07075 0.77 -0.5
1,472,472 + RR41_RS07075 0.77 +1.7
1,472,472 + RR41_RS07075 0.77 -0.4
1,472,473 - RR41_RS07075 0.77 +0.4
1,472,473 - RR41_RS07075 0.77 +1.1
1,472,473 - RR41_RS07075 0.77 -1.4
1,472,473 - RR41_RS07075 0.77 +1.4
1,472,501 + RR41_RS07075 0.80 +1.3
1,472,598 + -2.0
1,472,598 + -1.0
1,472,599 - +2.4
1,472,599 - -0.2
1,472,599 - +0.4
1,472,599 - -0.8
1,472,624 + -0.6
1,472,624 + -1.2
1,472,625 - -2.5
1,472,625 - +1.1
1,472,641 + +0.3
1,472,642 - +1.6
1,472,716 + -1.4
1,472,742 + +0.8
1,473,289 + -2.2
1,473,364 + -1.3
1,473,365 - -1.2
1,473,365 - +4.8
1,473,409 + +1.1
1,473,469 + -0.5
1,473,528 + RR41_RS07085 0.18 -1.6
1,473,547 + RR41_RS07085 0.21 -1.0
1,473,552 + RR41_RS07085 0.22 -2.2
1,473,590 - RR41_RS07085 0.29 -0.8
1,473,596 + RR41_RS07085 0.30 +0.2
1,473,635 - RR41_RS07085 0.36 -0.5
1,473,660 - RR41_RS07085 0.41 +2.2
1,473,762 - RR41_RS07085 0.58 -1.4
1,473,908 + RR41_RS07085 0.83 -0.5
1,473,996 - +1.8

Or see this region's nucleotide sequence