Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS07075 and RR41_RS07080 are separated by 93 nucleotides RR41_RS07080 and RR41_RS07085 are separated by 131 nucleotides RR41_RS07085 and RR41_RS19280 are separated by 15 nucleotides
RR41_RS07075: RR41_RS07075 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 1,471,747 to 1,472,691
_RS07075
RR41_RS07080: RR41_RS07080 - RNA chaperone Hfq, at 1,472,785 to 1,473,291
_RS07080
RR41_RS07085: RR41_RS07085 - DMT family transporter, at 1,473,423 to 1,474,007
_RS07085
RR41_RS19280: RR41_RS19280 - IS4-like element ISAba1 family transposase, at 1,474,023 to 1,475,113
_RS19280
Position (kb)
1473
1474
1475 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1472.453 kb on + strand, within RR41_RS07075 at 1472.454 kb on - strand, within RR41_RS07075 at 1472.472 kb on + strand, within RR41_RS07075 at 1472.472 kb on + strand, within RR41_RS07075 at 1472.472 kb on + strand, within RR41_RS07075 at 1472.473 kb on - strand, within RR41_RS07075 at 1472.473 kb on - strand, within RR41_RS07075 at 1472.473 kb on - strand, within RR41_RS07075 at 1472.473 kb on - strand, within RR41_RS07075 at 1472.501 kb on + strand, within RR41_RS07075 at 1472.598 kb on + strand at 1472.598 kb on + strand at 1472.599 kb on - strand at 1472.599 kb on - strand at 1472.599 kb on - strand at 1472.599 kb on - strand at 1472.624 kb on + strand at 1472.624 kb on + strand at 1472.625 kb on - strand at 1472.625 kb on - strand at 1472.641 kb on + strand at 1472.642 kb on - strand at 1472.716 kb on + strand at 1472.742 kb on + strand at 1473.289 kb on + strand at 1473.364 kb on + strand at 1473.365 kb on - strand at 1473.365 kb on - strand at 1473.409 kb on + strand at 1473.469 kb on + strand at 1473.528 kb on + strand, within RR41_RS07085 at 1473.547 kb on + strand, within RR41_RS07085 at 1473.552 kb on + strand, within RR41_RS07085 at 1473.590 kb on - strand, within RR41_RS07085 at 1473.596 kb on + strand, within RR41_RS07085 at 1473.635 kb on - strand, within RR41_RS07085 at 1473.660 kb on - strand, within RR41_RS07085 at 1473.762 kb on - strand, within RR41_RS07085 at 1473.908 kb on + strand, within RR41_RS07085 at 1473.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 1,472,453 + RR41_RS07075 0.75 -1.2 1,472,454 - RR41_RS07075 0.75 -1.2 1,472,472 + RR41_RS07075 0.77 -0.5 1,472,472 + RR41_RS07075 0.77 +1.7 1,472,472 + RR41_RS07075 0.77 -0.4 1,472,473 - RR41_RS07075 0.77 +0.4 1,472,473 - RR41_RS07075 0.77 +1.1 1,472,473 - RR41_RS07075 0.77 -1.4 1,472,473 - RR41_RS07075 0.77 +1.4 1,472,501 + RR41_RS07075 0.80 +1.3 1,472,598 + -2.0 1,472,598 + -1.0 1,472,599 - +2.4 1,472,599 - -0.2 1,472,599 - +0.4 1,472,599 - -0.8 1,472,624 + -0.6 1,472,624 + -1.2 1,472,625 - -2.5 1,472,625 - +1.1 1,472,641 + +0.3 1,472,642 - +1.6 1,472,716 + -1.4 1,472,742 + +0.8 1,473,289 + -2.2 1,473,364 + -1.3 1,473,365 - -1.2 1,473,365 - +4.8 1,473,409 + +1.1 1,473,469 + -0.5 1,473,528 + RR41_RS07085 0.18 -1.6 1,473,547 + RR41_RS07085 0.21 -1.0 1,473,552 + RR41_RS07085 0.22 -2.2 1,473,590 - RR41_RS07085 0.29 -0.8 1,473,596 + RR41_RS07085 0.30 +0.2 1,473,635 - RR41_RS07085 0.36 -0.5 1,473,660 - RR41_RS07085 0.41 +2.2 1,473,762 - RR41_RS07085 0.58 -1.4 1,473,908 + RR41_RS07085 0.83 -0.5 1,473,996 - +1.8
Or see this region's nucleotide sequence