Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS06715

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS06710 and RR41_RS06715 are separated by 156 nucleotidesRR41_RS06715 and RR41_RS06720 are separated by 232 nucleotides RR41_RS06710: RR41_RS06710 - 50S ribosomal protein L11 methyltransferase, at 1,389,760 to 1,390,665 _RS06710 RR41_RS06715: RR41_RS06715 - hypothetical protein, at 1,390,822 to 1,391,052 _RS06715 RR41_RS06720: RR41_RS06720 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 1,391,285 to 1,393,165 _RS06720 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2at 1389.826 kb on + strandat 1389.827 kb on - strandat 1389.912 kb on + strand, within RR41_RS06710at 1389.912 kb on + strand, within RR41_RS06710at 1389.912 kb on + strand, within RR41_RS06710at 1389.913 kb on - strand, within RR41_RS06710at 1390.027 kb on + strand, within RR41_RS06710at 1390.027 kb on + strand, within RR41_RS06710at 1390.027 kb on + strand, within RR41_RS06710at 1390.028 kb on - strand, within RR41_RS06710at 1390.031 kb on + strand, within RR41_RS06710at 1390.031 kb on + strand, within RR41_RS06710at 1390.031 kb on + strand, within RR41_RS06710at 1390.031 kb on + strand, within RR41_RS06710at 1390.031 kb on + strand, within RR41_RS06710at 1390.032 kb on - strand, within RR41_RS06710at 1390.032 kb on - strand, within RR41_RS06710at 1390.032 kb on - strand, within RR41_RS06710at 1390.032 kb on - strand, within RR41_RS06710at 1390.032 kb on - strand, within RR41_RS06710at 1390.033 kb on + strand, within RR41_RS06710at 1390.129 kb on + strand, within RR41_RS06710at 1390.185 kb on + strand, within RR41_RS06710at 1390.185 kb on + strand, within RR41_RS06710at 1390.216 kb on + strand, within RR41_RS06710at 1390.217 kb on - strand, within RR41_RS06710at 1390.243 kb on - strand, within RR41_RS06710at 1390.278 kb on + strand, within RR41_RS06710at 1390.284 kb on + strand, within RR41_RS06710at 1390.359 kb on - strand, within RR41_RS06710at 1390.534 kb on + strand, within RR41_RS06710at 1390.591 kb on + strandat 1390.600 kb on + strandat 1390.601 kb on - strandat 1390.649 kb on - strandat 1390.688 kb on + strandat 1390.696 kb on + strandat 1390.696 kb on + strandat 1390.696 kb on + strandat 1390.696 kb on + strandat 1390.709 kb on + strandat 1390.715 kb on - strandat 1390.715 kb on - strandat 1390.787 kb on - strandat 1390.820 kb on + strandat 1390.820 kb on + strandat 1390.821 kb on - strandat 1390.876 kb on - strand, within RR41_RS06715at 1390.876 kb on - strand, within RR41_RS06715at 1390.905 kb on - strand, within RR41_RS06715at 1390.905 kb on - strand, within RR41_RS06715at 1390.989 kb on + strand, within RR41_RS06715at 1391.015 kb on - strand, within RR41_RS06715at 1391.089 kb on + strandat 1391.110 kb on - strandat 1391.147 kb on + strandat 1391.218 kb on - strandat 1391.221 kb on + strandat 1391.227 kb on + strandat 1391.228 kb on - strandat 1391.824 kb on + strand, within RR41_RS06720

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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1,389,826 + +0.6
1,389,827 - -1.2
1,389,912 + RR41_RS06710 0.17 -1.4
1,389,912 + RR41_RS06710 0.17 -0.8
1,389,912 + RR41_RS06710 0.17 -0.8
1,389,913 - RR41_RS06710 0.17 +0.4
1,390,027 + RR41_RS06710 0.29 +1.4
1,390,027 + RR41_RS06710 0.29 +1.4
1,390,027 + RR41_RS06710 0.29 +1.0
1,390,028 - RR41_RS06710 0.30 -0.2
1,390,031 + RR41_RS06710 0.30 -2.1
1,390,031 + RR41_RS06710 0.30 -0.5
1,390,031 + RR41_RS06710 0.30 -0.2
1,390,031 + RR41_RS06710 0.30 -0.5
1,390,031 + RR41_RS06710 0.30 +1.8
1,390,032 - RR41_RS06710 0.30 -0.4
1,390,032 - RR41_RS06710 0.30 +0.4
1,390,032 - RR41_RS06710 0.30 -1.0
1,390,032 - RR41_RS06710 0.30 -1.8
1,390,032 - RR41_RS06710 0.30 +0.5
1,390,033 + RR41_RS06710 0.30 +0.8
1,390,129 + RR41_RS06710 0.41 -1.2
1,390,185 + RR41_RS06710 0.47 +0.8
1,390,185 + RR41_RS06710 0.47 -0.6
1,390,216 + RR41_RS06710 0.50 +1.2
1,390,217 - RR41_RS06710 0.50 -1.0
1,390,243 - RR41_RS06710 0.53 +1.0
1,390,278 + RR41_RS06710 0.57 -0.4
1,390,284 + RR41_RS06710 0.58 -1.4
1,390,359 - RR41_RS06710 0.66 -0.8
1,390,534 + RR41_RS06710 0.85 +0.8
1,390,591 + +1.8
1,390,600 + +0.2
1,390,601 - -1.0
1,390,649 - -1.0
1,390,688 + -0.7
1,390,696 + -0.0
1,390,696 + -0.8
1,390,696 + +0.4
1,390,696 + +0.0
1,390,709 + +2.2
1,390,715 - -1.4
1,390,715 - -1.0
1,390,787 - -0.2
1,390,820 + -0.8
1,390,820 + +0.2
1,390,821 - +0.4
1,390,876 - RR41_RS06715 0.23 -1.2
1,390,876 - RR41_RS06715 0.23 -0.6
1,390,905 - RR41_RS06715 0.36 +0.8
1,390,905 - RR41_RS06715 0.36 -1.4
1,390,989 + RR41_RS06715 0.72 +0.2
1,391,015 - RR41_RS06715 0.84 -0.7
1,391,089 + -0.8
1,391,110 - -0.6
1,391,147 + -0.6
1,391,218 - +0.8
1,391,221 + -1.2
1,391,227 + -1.2
1,391,228 - -1.4
1,391,824 + RR41_RS06720 0.29 +1.8

Or see this region's nucleotide sequence