Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS06685

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS06680 and RR41_RS06685 are separated by 75 nucleotidesRR41_RS06685 and RR41_RS06690 are separated by 248 nucleotides RR41_RS06680: RR41_RS06680 - methionine ABC transporter ATP-binding protein, at 1,382,966 to 1,383,991 _RS06680 RR41_RS06685: RR41_RS06685 - MetQ/NlpA family ABC transporter substrate-binding protein, at 1,384,067 to 1,384,933 _RS06685 RR41_RS06690: RR41_RS06690 - phosphoribosylamine--glycine ligase, at 1,385,182 to 1,386,468 _RS06690 Position (kb) 1384 1385Strain fitness (log2 ratio) -2 -1 0 1 2at 1383.124 kb on + strand, within RR41_RS06680at 1383.196 kb on - strand, within RR41_RS06680at 1383.657 kb on + strand, within RR41_RS06680at 1383.834 kb on - strand, within RR41_RS06680at 1383.875 kb on - strand, within RR41_RS06680at 1383.940 kb on + strandat 1384.005 kb on - strandat 1384.010 kb on - strandat 1384.058 kb on - strandat 1384.062 kb on + strandat 1384.063 kb on - strandat 1384.225 kb on + strand, within RR41_RS06685at 1384.230 kb on - strand, within RR41_RS06685at 1384.263 kb on + strand, within RR41_RS06685at 1384.266 kb on + strand, within RR41_RS06685at 1384.267 kb on - strand, within RR41_RS06685at 1384.289 kb on + strand, within RR41_RS06685at 1384.313 kb on - strand, within RR41_RS06685at 1384.315 kb on + strand, within RR41_RS06685at 1384.408 kb on + strand, within RR41_RS06685at 1384.569 kb on + strand, within RR41_RS06685at 1384.591 kb on - strand, within RR41_RS06685at 1384.778 kb on - strand, within RR41_RS06685at 1384.779 kb on + strand, within RR41_RS06685at 1384.821 kb on - strand, within RR41_RS06685at 1384.890 kb on - strandat 1384.893 kb on - strandat 1385.046 kb on + strandat 1385.105 kb on + strandat 1385.108 kb on + strandat 1385.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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1,383,124 + RR41_RS06680 0.15 -1.0
1,383,196 - RR41_RS06680 0.22 +1.8
1,383,657 + RR41_RS06680 0.67 +1.4
1,383,834 - RR41_RS06680 0.85 -0.2
1,383,875 - RR41_RS06680 0.89 +0.9
1,383,940 + -0.5
1,384,005 - +1.8
1,384,010 - +0.8
1,384,058 - +0.2
1,384,062 + -0.4
1,384,063 - +1.5
1,384,225 + RR41_RS06685 0.18 -0.2
1,384,230 - RR41_RS06685 0.19 -1.0
1,384,263 + RR41_RS06685 0.23 +0.2
1,384,266 + RR41_RS06685 0.23 -1.0
1,384,267 - RR41_RS06685 0.23 +1.8
1,384,289 + RR41_RS06685 0.26 -1.2
1,384,313 - RR41_RS06685 0.28 -0.8
1,384,315 + RR41_RS06685 0.29 -0.8
1,384,408 + RR41_RS06685 0.39 +1.0
1,384,569 + RR41_RS06685 0.58 -0.4
1,384,591 - RR41_RS06685 0.60 -1.1
1,384,778 - RR41_RS06685 0.82 -1.9
1,384,779 + RR41_RS06685 0.82 -0.0
1,384,821 - RR41_RS06685 0.87 -1.0
1,384,890 - +0.8
1,384,893 - +0.8
1,385,046 + +0.8
1,385,105 + -0.4
1,385,108 + +1.4
1,385,155 - +0.4

Or see this region's nucleotide sequence