Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS06680 and RR41_RS06685 are separated by 75 nucleotides RR41_RS06685 and RR41_RS06690 are separated by 248 nucleotides
RR41_RS06680: RR41_RS06680 - methionine ABC transporter ATP-binding protein, at 1,382,966 to 1,383,991
_RS06680
RR41_RS06685: RR41_RS06685 - MetQ/NlpA family ABC transporter substrate-binding protein, at 1,384,067 to 1,384,933
_RS06685
RR41_RS06690: RR41_RS06690 - phosphoribosylamine--glycine ligase, at 1,385,182 to 1,386,468
_RS06690
Position (kb)
1384
1385 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1383.124 kb on + strand, within RR41_RS06680 at 1383.196 kb on - strand, within RR41_RS06680 at 1383.657 kb on + strand, within RR41_RS06680 at 1383.834 kb on - strand, within RR41_RS06680 at 1383.875 kb on - strand, within RR41_RS06680 at 1383.940 kb on + strand at 1384.005 kb on - strand at 1384.010 kb on - strand at 1384.058 kb on - strand at 1384.062 kb on + strand at 1384.063 kb on - strand at 1384.225 kb on + strand, within RR41_RS06685 at 1384.230 kb on - strand, within RR41_RS06685 at 1384.263 kb on + strand, within RR41_RS06685 at 1384.266 kb on + strand, within RR41_RS06685 at 1384.267 kb on - strand, within RR41_RS06685 at 1384.289 kb on + strand, within RR41_RS06685 at 1384.313 kb on - strand, within RR41_RS06685 at 1384.315 kb on + strand, within RR41_RS06685 at 1384.408 kb on + strand, within RR41_RS06685 at 1384.569 kb on + strand, within RR41_RS06685 at 1384.591 kb on - strand, within RR41_RS06685 at 1384.778 kb on - strand, within RR41_RS06685 at 1384.779 kb on + strand, within RR41_RS06685 at 1384.821 kb on - strand, within RR41_RS06685 at 1384.890 kb on - strand at 1384.893 kb on - strand at 1385.046 kb on + strand at 1385.105 kb on + strand at 1385.108 kb on + strand at 1385.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 1,383,124 + RR41_RS06680 0.15 -1.0 1,383,196 - RR41_RS06680 0.22 +1.8 1,383,657 + RR41_RS06680 0.67 +1.4 1,383,834 - RR41_RS06680 0.85 -0.2 1,383,875 - RR41_RS06680 0.89 +0.9 1,383,940 + -0.5 1,384,005 - +1.8 1,384,010 - +0.8 1,384,058 - +0.2 1,384,062 + -0.4 1,384,063 - +1.5 1,384,225 + RR41_RS06685 0.18 -0.2 1,384,230 - RR41_RS06685 0.19 -1.0 1,384,263 + RR41_RS06685 0.23 +0.2 1,384,266 + RR41_RS06685 0.23 -1.0 1,384,267 - RR41_RS06685 0.23 +1.8 1,384,289 + RR41_RS06685 0.26 -1.2 1,384,313 - RR41_RS06685 0.28 -0.8 1,384,315 + RR41_RS06685 0.29 -0.8 1,384,408 + RR41_RS06685 0.39 +1.0 1,384,569 + RR41_RS06685 0.58 -0.4 1,384,591 - RR41_RS06685 0.60 -1.1 1,384,778 - RR41_RS06685 0.82 -1.9 1,384,779 + RR41_RS06685 0.82 -0.0 1,384,821 - RR41_RS06685 0.87 -1.0 1,384,890 - +0.8 1,384,893 - +0.8 1,385,046 + +0.8 1,385,105 + -0.4 1,385,108 + +1.4 1,385,155 - +0.4
Or see this region's nucleotide sequence