Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS06320 and RR41_RS06325 are separated by 56 nucleotides RR41_RS06325 and RR41_RS06330 are separated by 22 nucleotides
RR41_RS06320: RR41_RS06320 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,317,044 to 1,318,117
_RS06320
RR41_RS06325: RR41_RS06325 - histidine phosphatase family protein, at 1,318,174 to 1,318,629
_RS06325
RR41_RS06330: RR41_RS06330 - type II secretion system protein GspL, at 1,318,652 to 1,319,791
_RS06330
Position (kb)
1318
1319 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1318.144 kb on + strand at 1318.144 kb on + strand at 1318.145 kb on - strand at 1318.231 kb on - strand, within RR41_RS06325 at 1318.369 kb on + strand, within RR41_RS06325 at 1318.370 kb on - strand, within RR41_RS06325 at 1318.370 kb on - strand, within RR41_RS06325 at 1318.375 kb on - strand, within RR41_RS06325 at 1318.504 kb on - strand, within RR41_RS06325 at 1318.614 kb on + strand at 1318.615 kb on - strand at 1318.617 kb on - strand at 1318.625 kb on + strand at 1318.626 kb on - strand at 1318.658 kb on + strand at 1318.659 kb on - strand at 1318.662 kb on + strand at 1318.663 kb on - strand at 1318.663 kb on - strand at 1318.663 kb on - strand at 1318.759 kb on - strand at 1318.869 kb on - strand, within RR41_RS06330 at 1318.873 kb on - strand, within RR41_RS06330 at 1319.172 kb on + strand, within RR41_RS06330 at 1319.380 kb on + strand, within RR41_RS06330 at 1319.396 kb on - strand, within RR41_RS06330 at 1319.471 kb on - strand, within RR41_RS06330 at 1319.491 kb on + strand, within RR41_RS06330 at 1319.602 kb on - strand, within RR41_RS06330
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 1,318,144 + +0.6 1,318,144 + +0.2 1,318,145 - +0.8 1,318,231 - RR41_RS06325 0.12 -0.8 1,318,369 + RR41_RS06325 0.43 -1.2 1,318,370 - RR41_RS06325 0.43 -1.0 1,318,370 - RR41_RS06325 0.43 -1.0 1,318,375 - RR41_RS06325 0.44 -1.0 1,318,504 - RR41_RS06325 0.72 -0.2 1,318,614 + +0.2 1,318,615 - -0.2 1,318,617 - +0.2 1,318,625 + -0.5 1,318,626 - -0.2 1,318,658 + -1.0 1,318,659 - -1.4 1,318,662 + -0.8 1,318,663 - -0.5 1,318,663 - +1.1 1,318,663 - +2.4 1,318,759 - -0.5 1,318,869 - RR41_RS06330 0.19 +0.8 1,318,873 - RR41_RS06330 0.19 -2.6 1,319,172 + RR41_RS06330 0.46 -0.3 1,319,380 + RR41_RS06330 0.64 -2.2 1,319,396 - RR41_RS06330 0.65 +0.8 1,319,471 - RR41_RS06330 0.72 -0.5 1,319,491 + RR41_RS06330 0.74 -0.2 1,319,602 - RR41_RS06330 0.83 +0.3
Or see this region's nucleotide sequence