Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS06325

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS06320 and RR41_RS06325 are separated by 56 nucleotidesRR41_RS06325 and RR41_RS06330 are separated by 22 nucleotides RR41_RS06320: RR41_RS06320 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,317,044 to 1,318,117 _RS06320 RR41_RS06325: RR41_RS06325 - histidine phosphatase family protein, at 1,318,174 to 1,318,629 _RS06325 RR41_RS06330: RR41_RS06330 - type II secretion system protein GspL, at 1,318,652 to 1,319,791 _RS06330 Position (kb) 1318 1319Strain fitness (log2 ratio) -2 -1 0 1 2at 1318.144 kb on + strandat 1318.144 kb on + strandat 1318.145 kb on - strandat 1318.231 kb on - strand, within RR41_RS06325at 1318.369 kb on + strand, within RR41_RS06325at 1318.370 kb on - strand, within RR41_RS06325at 1318.370 kb on - strand, within RR41_RS06325at 1318.375 kb on - strand, within RR41_RS06325at 1318.504 kb on - strand, within RR41_RS06325at 1318.614 kb on + strandat 1318.615 kb on - strandat 1318.617 kb on - strandat 1318.625 kb on + strandat 1318.626 kb on - strandat 1318.658 kb on + strandat 1318.659 kb on - strandat 1318.662 kb on + strandat 1318.663 kb on - strandat 1318.663 kb on - strandat 1318.663 kb on - strandat 1318.759 kb on - strandat 1318.869 kb on - strand, within RR41_RS06330at 1318.873 kb on - strand, within RR41_RS06330at 1319.172 kb on + strand, within RR41_RS06330at 1319.380 kb on + strand, within RR41_RS06330at 1319.396 kb on - strand, within RR41_RS06330at 1319.471 kb on - strand, within RR41_RS06330at 1319.491 kb on + strand, within RR41_RS06330at 1319.602 kb on - strand, within RR41_RS06330

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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1,318,144 + +0.6
1,318,144 + +0.2
1,318,145 - +0.8
1,318,231 - RR41_RS06325 0.12 -0.8
1,318,369 + RR41_RS06325 0.43 -1.2
1,318,370 - RR41_RS06325 0.43 -1.0
1,318,370 - RR41_RS06325 0.43 -1.0
1,318,375 - RR41_RS06325 0.44 -1.0
1,318,504 - RR41_RS06325 0.72 -0.2
1,318,614 + +0.2
1,318,615 - -0.2
1,318,617 - +0.2
1,318,625 + -0.5
1,318,626 - -0.2
1,318,658 + -1.0
1,318,659 - -1.4
1,318,662 + -0.8
1,318,663 - -0.5
1,318,663 - +1.1
1,318,663 - +2.4
1,318,759 - -0.5
1,318,869 - RR41_RS06330 0.19 +0.8
1,318,873 - RR41_RS06330 0.19 -2.6
1,319,172 + RR41_RS06330 0.46 -0.3
1,319,380 + RR41_RS06330 0.64 -2.2
1,319,396 - RR41_RS06330 0.65 +0.8
1,319,471 - RR41_RS06330 0.72 -0.5
1,319,491 + RR41_RS06330 0.74 -0.2
1,319,602 - RR41_RS06330 0.83 +0.3

Or see this region's nucleotide sequence