Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS05910

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS05890 and RR41_RS05895 are separated by 1 nucleotidesRR41_RS05895 and RR41_RS05900 overlap by 4 nucleotidesRR41_RS05900 and RR41_RS05905 are separated by 94 nucleotidesRR41_RS05905 and RR41_RS05910 are separated by 66 nucleotidesRR41_RS05910 and RR41_RS05915 overlap by 1 nucleotidesRR41_RS05915 and RR41_RS05920 are separated by 1 nucleotides RR41_RS05890: RR41_RS05890 - hypothetical protein, at 1,232,635 to 1,232,937 _RS05890 RR41_RS05895: RR41_RS05895 - hypothetical protein, at 1,232,939 to 1,233,256 _RS05895 RR41_RS05900: RR41_RS05900 - hypothetical protein, at 1,233,253 to 1,233,477 _RS05900 RR41_RS05905: RR41_RS05905 - hypothetical protein, at 1,233,572 to 1,233,751 _RS05905 RR41_RS05910: RR41_RS05910 - hypothetical protein, at 1,233,818 to 1,234,141 _RS05910 RR41_RS05915: RR41_RS05915 - hypothetical protein, at 1,234,141 to 1,234,371 _RS05915 RR41_RS05920: RR41_RS05920 - portal protein, at 1,234,373 to 1,236,016 _RS05920 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -2 -1 0 1 2at 1232.842 kb on + strand, within RR41_RS05890at 1232.850 kb on + strand, within RR41_RS05890at 1232.920 kb on - strandat 1232.994 kb on + strand, within RR41_RS05895at 1233.023 kb on + strand, within RR41_RS05895at 1233.023 kb on + strand, within RR41_RS05895at 1233.024 kb on - strand, within RR41_RS05895at 1233.075 kb on + strand, within RR41_RS05895at 1233.075 kb on + strand, within RR41_RS05895at 1233.076 kb on - strand, within RR41_RS05895at 1233.077 kb on + strand, within RR41_RS05895at 1233.078 kb on - strand, within RR41_RS05895at 1233.078 kb on - strand, within RR41_RS05895at 1233.078 kb on - strand, within RR41_RS05895at 1233.078 kb on - strand, within RR41_RS05895at 1233.093 kb on + strand, within RR41_RS05895at 1233.094 kb on - strand, within RR41_RS05895at 1233.133 kb on + strand, within RR41_RS05895at 1233.133 kb on + strand, within RR41_RS05895at 1233.134 kb on - strand, within RR41_RS05895at 1233.138 kb on + strand, within RR41_RS05895at 1233.170 kb on - strand, within RR41_RS05895at 1233.175 kb on + strand, within RR41_RS05895at 1233.175 kb on + strand, within RR41_RS05895at 1233.209 kb on + strand, within RR41_RS05895at 1233.272 kb on + strandat 1233.273 kb on - strandat 1233.273 kb on - strandat 1233.273 kb on - strandat 1233.273 kb on - strandat 1233.287 kb on + strand, within RR41_RS05900at 1233.288 kb on - strand, within RR41_RS05900at 1233.312 kb on + strand, within RR41_RS05900at 1233.312 kb on + strand, within RR41_RS05900at 1233.312 kb on + strand, within RR41_RS05900at 1233.314 kb on + strand, within RR41_RS05900at 1233.346 kb on + strand, within RR41_RS05900at 1233.346 kb on + strand, within RR41_RS05900at 1233.346 kb on + strand, within RR41_RS05900at 1233.356 kb on + strand, within RR41_RS05900at 1233.357 kb on - strand, within RR41_RS05900at 1233.357 kb on - strand, within RR41_RS05900at 1233.406 kb on + strand, within RR41_RS05900at 1233.431 kb on + strand, within RR41_RS05900at 1233.447 kb on + strand, within RR41_RS05900at 1233.525 kb on + strandat 1233.534 kb on + strandat 1233.534 kb on + strandat 1233.542 kb on + strandat 1233.543 kb on - strandat 1233.546 kb on + strandat 1233.547 kb on - strandat 1233.577 kb on + strandat 1233.620 kb on + strand, within RR41_RS05905at 1233.621 kb on - strand, within RR41_RS05905at 1233.636 kb on - strand, within RR41_RS05905at 1233.665 kb on + strand, within RR41_RS05905at 1233.665 kb on + strand, within RR41_RS05905at 1233.665 kb on + strand, within RR41_RS05905at 1233.666 kb on - strand, within RR41_RS05905at 1233.666 kb on - strand, within RR41_RS05905at 1233.666 kb on - strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.699 kb on + strand, within RR41_RS05905at 1233.700 kb on - strand, within RR41_RS05905at 1233.700 kb on - strand, within RR41_RS05905at 1233.718 kb on + strand, within RR41_RS05905at 1233.772 kb on + strandat 1233.772 kb on + strandat 1233.773 kb on - strandat 1233.773 kb on - strandat 1233.773 kb on - strandat 1233.895 kb on - strand, within RR41_RS05910at 1233.905 kb on - strand, within RR41_RS05910at 1233.931 kb on - strand, within RR41_RS05910at 1233.944 kb on - strand, within RR41_RS05910at 1234.032 kb on + strand, within RR41_RS05910at 1234.043 kb on - strand, within RR41_RS05910at 1234.127 kb on - strandat 1234.197 kb on + strand, within RR41_RS05915at 1234.271 kb on + strand, within RR41_RS05915at 1234.272 kb on - strand, within RR41_RS05915at 1234.272 kb on - strand, within RR41_RS05915at 1234.384 kb on - strandat 1234.396 kb on - strandat 1234.408 kb on - strandat 1234.461 kb on - strandat 1234.497 kb on + strandat 1234.498 kb on - strandat 1234.498 kb on - strandat 1234.498 kb on - strandat 1234.498 kb on - strandat 1234.509 kb on + strandat 1234.516 kb on + strandat 1234.522 kb on + strandat 1234.542 kb on + strand, within RR41_RS05920at 1234.542 kb on + strand, within RR41_RS05920at 1234.575 kb on + strand, within RR41_RS05920at 1234.627 kb on + strand, within RR41_RS05920at 1234.729 kb on + strand, within RR41_RS05920at 1234.789 kb on - strand, within RR41_RS05920at 1234.794 kb on - strand, within RR41_RS05920at 1234.794 kb on - strand, within RR41_RS05920at 1234.826 kb on + strand, within RR41_RS05920at 1234.827 kb on - strand, within RR41_RS05920at 1234.827 kb on - strand, within RR41_RS05920at 1234.830 kb on + strand, within RR41_RS05920at 1234.860 kb on - strand, within RR41_RS05920at 1234.860 kb on - strand, within RR41_RS05920at 1234.863 kb on + strand, within RR41_RS05920at 1234.863 kb on + strand, within RR41_RS05920at 1234.864 kb on - strand, within RR41_RS05920at 1234.943 kb on + strand, within RR41_RS05920at 1234.982 kb on + strand, within RR41_RS05920at 1234.982 kb on + strand, within RR41_RS05920at 1234.983 kb on - strand, within RR41_RS05920at 1234.983 kb on - strand, within RR41_RS05920

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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1,232,842 + RR41_RS05890 0.68 +1.1
1,232,850 + RR41_RS05890 0.71 -1.1
1,232,920 - -0.1
1,232,994 + RR41_RS05895 0.17 -0.1
1,233,023 + RR41_RS05895 0.26 +0.3
1,233,023 + RR41_RS05895 0.26 +1.0
1,233,024 - RR41_RS05895 0.27 -0.3
1,233,075 + RR41_RS05895 0.43 +2.5
1,233,075 + RR41_RS05895 0.43 +1.7
1,233,076 - RR41_RS05895 0.43 +0.4
1,233,077 + RR41_RS05895 0.43 +1.7
1,233,078 - RR41_RS05895 0.44 -0.6
1,233,078 - RR41_RS05895 0.44 +0.1
1,233,078 - RR41_RS05895 0.44 -1.4
1,233,078 - RR41_RS05895 0.44 -0.4
1,233,093 + RR41_RS05895 0.48 -1.7
1,233,094 - RR41_RS05895 0.49 -0.3
1,233,133 + RR41_RS05895 0.61 +1.7
1,233,133 + RR41_RS05895 0.61 +1.3
1,233,134 - RR41_RS05895 0.61 -0.9
1,233,138 + RR41_RS05895 0.63 +2.1
1,233,170 - RR41_RS05895 0.73 +0.1
1,233,175 + RR41_RS05895 0.74 -0.9
1,233,175 + RR41_RS05895 0.74 +1.7
1,233,209 + RR41_RS05895 0.85 +1.0
1,233,272 + -0.7
1,233,273 - -0.3
1,233,273 - +0.1
1,233,273 - +0.1
1,233,273 - +0.7
1,233,287 + RR41_RS05900 0.15 +0.1
1,233,288 - RR41_RS05900 0.16 +0.1
1,233,312 + RR41_RS05900 0.26 +0.6
1,233,312 + RR41_RS05900 0.26 -1.7
1,233,312 + RR41_RS05900 0.26 -0.4
1,233,314 + RR41_RS05900 0.27 +0.7
1,233,346 + RR41_RS05900 0.41 -1.1
1,233,346 + RR41_RS05900 0.41 -0.5
1,233,346 + RR41_RS05900 0.41 -0.1
1,233,356 + RR41_RS05900 0.46 +0.7
1,233,357 - RR41_RS05900 0.46 +0.1
1,233,357 - RR41_RS05900 0.46 +0.1
1,233,406 + RR41_RS05900 0.68 -0.9
1,233,431 + RR41_RS05900 0.79 -0.3
1,233,447 + RR41_RS05900 0.86 +1.7
1,233,525 + -0.3
1,233,534 + -1.1
1,233,534 + -1.5
1,233,542 + -0.9
1,233,543 - -0.7
1,233,546 + -1.1
1,233,547 - +0.3
1,233,577 + -1.1
1,233,620 + RR41_RS05905 0.27 -0.9
1,233,621 - RR41_RS05905 0.27 -0.9
1,233,636 - RR41_RS05905 0.36 -2.3
1,233,665 + RR41_RS05905 0.52 -0.3
1,233,665 + RR41_RS05905 0.52 -0.6
1,233,665 + RR41_RS05905 0.52 +1.7
1,233,666 - RR41_RS05905 0.52 +2.1
1,233,666 - RR41_RS05905 0.52 -1.5
1,233,666 - RR41_RS05905 0.52 -0.3
1,233,699 + RR41_RS05905 0.71 -1.1
1,233,699 + RR41_RS05905 0.71 -0.6
1,233,699 + RR41_RS05905 0.71 -0.1
1,233,699 + RR41_RS05905 0.71 -0.3
1,233,699 + RR41_RS05905 0.71 +0.5
1,233,699 + RR41_RS05905 0.71 +1.0
1,233,699 + RR41_RS05905 0.71 -1.1
1,233,699 + RR41_RS05905 0.71 +0.1
1,233,699 + RR41_RS05905 0.71 +1.1
1,233,699 + RR41_RS05905 0.71 -0.6
1,233,700 - RR41_RS05905 0.71 +0.1
1,233,700 - RR41_RS05905 0.71 -0.9
1,233,718 + RR41_RS05905 0.81 -0.5
1,233,772 + +1.0
1,233,772 + -1.1
1,233,773 - +1.1
1,233,773 - -0.6
1,233,773 - +1.7
1,233,895 - RR41_RS05910 0.24 -0.3
1,233,905 - RR41_RS05910 0.27 -0.3
1,233,931 - RR41_RS05910 0.35 +0.5
1,233,944 - RR41_RS05910 0.39 -0.6
1,234,032 + RR41_RS05910 0.66 -0.7
1,234,043 - RR41_RS05910 0.69 -1.9
1,234,127 - -0.4
1,234,197 + RR41_RS05915 0.24 -1.1
1,234,271 + RR41_RS05915 0.56 -0.1
1,234,272 - RR41_RS05915 0.57 +2.7
1,234,272 - RR41_RS05915 0.57 -1.1
1,234,384 - +1.7
1,234,396 - -2.1
1,234,408 - -0.6
1,234,461 - -0.2
1,234,497 + +2.0
1,234,498 - -1.4
1,234,498 - -0.3
1,234,498 - +0.7
1,234,498 - +0.5
1,234,509 + +1.0
1,234,516 + +0.1
1,234,522 + +2.0
1,234,542 + RR41_RS05920 0.10 +1.0
1,234,542 + RR41_RS05920 0.10 +2.5
1,234,575 + RR41_RS05920 0.12 +0.7
1,234,627 + RR41_RS05920 0.15 -0.3
1,234,729 + RR41_RS05920 0.22 -1.1
1,234,789 - RR41_RS05920 0.25 +1.7
1,234,794 - RR41_RS05920 0.26 +0.1
1,234,794 - RR41_RS05920 0.26 -0.6
1,234,826 + RR41_RS05920 0.28 +0.8
1,234,827 - RR41_RS05920 0.28 -0.6
1,234,827 - RR41_RS05920 0.28 -0.9
1,234,830 + RR41_RS05920 0.28 +0.7
1,234,860 - RR41_RS05920 0.30 -0.6
1,234,860 - RR41_RS05920 0.30 +2.0
1,234,863 + RR41_RS05920 0.30 -0.9
1,234,863 + RR41_RS05920 0.30 -2.5
1,234,864 - RR41_RS05920 0.30 +1.7
1,234,943 + RR41_RS05920 0.35 +0.3
1,234,982 + RR41_RS05920 0.37 -0.3
1,234,982 + RR41_RS05920 0.37 -1.1
1,234,983 - RR41_RS05920 0.37 +0.0
1,234,983 - RR41_RS05920 0.37 -1.4

Or see this region's nucleotide sequence