Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS04645 and RR41_RS04650 are separated by 54 nucleotides RR41_RS04650 and RR41_RS04655 are separated by 27 nucleotides RR41_RS04655 and RR41_RS04660 are separated by 94 nucleotides
RR41_RS04645: RR41_RS04645 - NF038105 family protein, at 962,139 to 962,327
_RS04645
RR41_RS04650: RR41_RS04650 - peptidoglycan-associated lipoprotein Pal, at 962,382 to 962,951
_RS04650
RR41_RS04655: RR41_RS04655 - Tol-Pal system beta propeller repeat protein TolB, at 962,979 to 964,259
_RS04655
RR41_RS04660: RR41_RS04660 - cell envelope integrity protein TolA, at 964,354 to 965,700
_RS04660
Position (kb) 962
963
964
965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 962.048 kb on - strand at 962.067 kb on + strand at 962.067 kb on + strand at 962.067 kb on + strand at 962.067 kb on + strand at 962.073 kb on + strand at 962.073 kb on + strand at 962.073 kb on + strand at 962.087 kb on + strand at 962.094 kb on + strand at 962.094 kb on + strand at 962.095 kb on - strand at 962.120 kb on + strand at 962.120 kb on + strand at 962.121 kb on - strand at 962.121 kb on - strand at 962.147 kb on + strand at 962.147 kb on + strand at 962.148 kb on - strand at 962.191 kb on + strand, within RR41_RS04645 at 962.255 kb on + strand, within RR41_RS04645 at 962.265 kb on - strand, within RR41_RS04645 at 962.265 kb on - strand, within RR41_RS04645 at 962.265 kb on - strand, within RR41_RS04645 at 962.268 kb on - strand, within RR41_RS04645 at 962.325 kb on + strand at 962.384 kb on - strand at 962.384 kb on - strand at 962.410 kb on + strand at 962.411 kb on - strand at 962.411 kb on - strand at 962.411 kb on - strand at 962.414 kb on + strand at 962.485 kb on + strand, within RR41_RS04650 at 962.486 kb on - strand, within RR41_RS04650 at 962.515 kb on - strand, within RR41_RS04650 at 962.526 kb on - strand, within RR41_RS04650 at 962.533 kb on + strand, within RR41_RS04650 at 962.579 kb on - strand, within RR41_RS04650 at 962.688 kb on + strand, within RR41_RS04650 at 962.755 kb on - strand, within RR41_RS04650 at 962.793 kb on + strand, within RR41_RS04650 at 962.811 kb on + strand, within RR41_RS04650 at 962.826 kb on + strand, within RR41_RS04650 at 962.826 kb on + strand, within RR41_RS04650 at 962.852 kb on + strand, within RR41_RS04650 at 962.852 kb on + strand, within RR41_RS04650 at 962.853 kb on - strand, within RR41_RS04650 at 962.909 kb on + strand at 962.910 kb on - strand at 962.913 kb on + strand at 962.984 kb on + strand at 963.007 kb on - strand at 963.007 kb on - strand at 963.062 kb on + strand at 963.062 kb on + strand at 963.062 kb on + strand at 963.063 kb on - strand at 963.063 kb on - strand at 963.063 kb on - strand at 963.098 kb on - strand at 963.098 kb on - strand at 963.103 kb on - strand at 963.142 kb on - strand, within RR41_RS04655 at 963.179 kb on + strand, within RR41_RS04655 at 963.179 kb on + strand, within RR41_RS04655 at 963.201 kb on - strand, within RR41_RS04655 at 963.202 kb on + strand, within RR41_RS04655 at 963.203 kb on - strand, within RR41_RS04655 at 963.207 kb on - strand, within RR41_RS04655 at 963.207 kb on - strand, within RR41_RS04655 at 963.255 kb on + strand, within RR41_RS04655 at 963.255 kb on + strand, within RR41_RS04655 at 963.284 kb on + strand, within RR41_RS04655 at 963.300 kb on + strand, within RR41_RS04655 at 963.448 kb on - strand, within RR41_RS04655 at 963.495 kb on + strand, within RR41_RS04655 at 963.496 kb on - strand, within RR41_RS04655 at 963.537 kb on + strand, within RR41_RS04655 at 963.537 kb on + strand, within RR41_RS04655 at 963.537 kb on + strand, within RR41_RS04655 at 963.537 kb on + strand, within RR41_RS04655 at 963.538 kb on - strand, within RR41_RS04655 at 963.545 kb on + strand, within RR41_RS04655 at 963.558 kb on + strand, within RR41_RS04655 at 963.559 kb on - strand, within RR41_RS04655 at 963.589 kb on - strand, within RR41_RS04655 at 963.609 kb on - strand, within RR41_RS04655 at 963.714 kb on - strand, within RR41_RS04655 at 963.727 kb on - strand, within RR41_RS04655 at 963.734 kb on - strand, within RR41_RS04655 at 963.762 kb on + strand, within RR41_RS04655 at 963.765 kb on + strand, within RR41_RS04655 at 963.765 kb on + strand, within RR41_RS04655 at 963.765 kb on + strand, within RR41_RS04655 at 963.766 kb on - strand, within RR41_RS04655 at 963.818 kb on - strand, within RR41_RS04655 at 963.821 kb on + strand, within RR41_RS04655 at 963.832 kb on - strand, within RR41_RS04655 at 963.832 kb on - strand, within RR41_RS04655 at 963.832 kb on - strand, within RR41_RS04655 at 963.836 kb on + strand, within RR41_RS04655 at 963.836 kb on + strand, within RR41_RS04655 at 963.836 kb on + strand, within RR41_RS04655 at 963.836 kb on + strand, within RR41_RS04655 at 963.837 kb on - strand, within RR41_RS04655 at 963.837 kb on - strand, within RR41_RS04655 at 963.852 kb on + strand, within RR41_RS04655 at 963.853 kb on - strand, within RR41_RS04655 at 963.873 kb on + strand, within RR41_RS04655 at 963.873 kb on + strand, within RR41_RS04655 at 963.913 kb on + strand, within RR41_RS04655 at 963.914 kb on - strand, within RR41_RS04655 at 963.914 kb on - strand, within RR41_RS04655 at 963.923 kb on - strand, within RR41_RS04655 at 963.953 kb on + strand, within RR41_RS04655 at 963.973 kb on + strand, within RR41_RS04655 at 963.974 kb on - strand, within RR41_RS04655 at 964.019 kb on + strand, within RR41_RS04655 at 964.020 kb on - strand, within RR41_RS04655 at 964.020 kb on - strand, within RR41_RS04655 at 964.096 kb on + strand, within RR41_RS04655 at 964.115 kb on + strand, within RR41_RS04655 at 964.116 kb on - strand, within RR41_RS04655 at 964.209 kb on + strand at 964.209 kb on + strand at 964.209 kb on + strand at 964.209 kb on + strand at 964.209 kb on + strand at 964.209 kb on + strand at 964.210 kb on - strand at 964.210 kb on - strand at 964.218 kb on - strand at 964.221 kb on + strand at 964.260 kb on - strand at 964.266 kb on - strand at 964.305 kb on - strand at 964.309 kb on + strand at 964.309 kb on + strand at 964.309 kb on + strand at 964.309 kb on + strand at 964.309 kb on + strand at 964.309 kb on + strand at 964.309 kb on + strand at 964.309 kb on + strand at 964.310 kb on - strand at 964.310 kb on - strand at 964.313 kb on + strand at 964.313 kb on + strand at 964.313 kb on + strand at 964.313 kb on + strand at 964.313 kb on + strand at 964.314 kb on - strand at 964.314 kb on - strand at 964.331 kb on + strand at 964.332 kb on - strand at 964.340 kb on + strand at 964.340 kb on + strand at 964.341 kb on - strand at 964.341 kb on - strand at 964.341 kb on - strand at 964.341 kb on - strand at 964.341 kb on - strand at 964.355 kb on + strand at 964.714 kb on - strand, within RR41_RS04660 at 964.714 kb on - strand, within RR41_RS04660 at 964.884 kb on + strand, within RR41_RS04660 at 964.885 kb on - strand, within RR41_RS04660 at 964.977 kb on + strand, within RR41_RS04660 at 964.978 kb on - strand, within RR41_RS04660 at 965.035 kb on - strand, within RR41_RS04660 at 965.082 kb on + strand, within RR41_RS04660
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 962,048 - -0.3 962,067 + -2.6 962,067 + +0.9 962,067 + -0.9 962,067 + +0.8 962,073 + +1.7 962,073 + +0.9 962,073 + +1.8 962,087 + -1.3 962,094 + -0.6 962,094 + -0.3 962,095 - +3.3 962,120 + -0.3 962,120 + -0.1 962,121 - -0.3 962,121 - +0.5 962,147 + +0.7 962,147 + -0.5 962,148 - -0.7 962,191 + RR41_RS04645 0.28 -1.2 962,255 + RR41_RS04645 0.61 -0.6 962,265 - RR41_RS04645 0.67 -0.6 962,265 - RR41_RS04645 0.67 +0.9 962,265 - RR41_RS04645 0.67 -0.3 962,268 - RR41_RS04645 0.68 +2.3 962,325 + +1.4 962,384 - -1.3 962,384 - -0.6 962,410 + -1.2 962,411 - -0.6 962,411 - +0.1 962,411 - +1.1 962,414 + -0.6 962,485 + RR41_RS04650 0.18 -1.6 962,486 - RR41_RS04650 0.18 -0.9 962,515 - RR41_RS04650 0.23 +0.5 962,526 - RR41_RS04650 0.25 -1.6 962,533 + RR41_RS04650 0.26 -1.3 962,579 - RR41_RS04650 0.35 +1.4 962,688 + RR41_RS04650 0.54 -1.3 962,755 - RR41_RS04650 0.65 +0.1 962,793 + RR41_RS04650 0.72 -2.4 962,811 + RR41_RS04650 0.75 +1.1 962,826 + RR41_RS04650 0.78 -0.3 962,826 + RR41_RS04650 0.78 -0.9 962,852 + RR41_RS04650 0.82 +0.7 962,852 + RR41_RS04650 0.82 +0.1 962,853 - RR41_RS04650 0.83 -1.5 962,909 + -0.3 962,910 - -0.1 962,913 + +0.7 962,984 + -1.1 963,007 - +0.7 963,007 - -1.5 963,062 + +0.1 963,062 + -0.3 963,062 + -3.0 963,063 - +0.1 963,063 - -1.3 963,063 - -0.3 963,098 - -0.6 963,098 - -0.6 963,103 - -1.1 963,142 - RR41_RS04655 0.13 +0.1 963,179 + RR41_RS04655 0.16 -0.6 963,179 + RR41_RS04655 0.16 -2.5 963,201 - RR41_RS04655 0.17 -0.6 963,202 + RR41_RS04655 0.17 -2.5 963,203 - RR41_RS04655 0.17 +0.7 963,207 - RR41_RS04655 0.18 -0.8 963,207 - RR41_RS04655 0.18 -1.9 963,255 + RR41_RS04655 0.22 -0.6 963,255 + RR41_RS04655 0.22 -1.1 963,284 + RR41_RS04655 0.24 +0.1 963,300 + RR41_RS04655 0.25 +0.7 963,448 - RR41_RS04655 0.37 -2.3 963,495 + RR41_RS04655 0.40 -0.9 963,496 - RR41_RS04655 0.40 -0.3 963,537 + RR41_RS04655 0.44 -1.3 963,537 + RR41_RS04655 0.44 +2.2 963,537 + RR41_RS04655 0.44 -0.6 963,537 + RR41_RS04655 0.44 -2.0 963,538 - RR41_RS04655 0.44 +0.7 963,545 + RR41_RS04655 0.44 +0.1 963,558 + RR41_RS04655 0.45 -1.3 963,559 - RR41_RS04655 0.45 -1.3 963,589 - RR41_RS04655 0.48 +0.4 963,609 - RR41_RS04655 0.49 -1.3 963,714 - RR41_RS04655 0.57 -0.6 963,727 - RR41_RS04655 0.58 -0.6 963,734 - RR41_RS04655 0.59 +2.3 963,762 + RR41_RS04655 0.61 +0.7 963,765 + RR41_RS04655 0.61 -1.6 963,765 + RR41_RS04655 0.61 -0.3 963,765 + RR41_RS04655 0.61 -0.6 963,766 - RR41_RS04655 0.61 -0.3 963,818 - RR41_RS04655 0.65 -1.8 963,821 + RR41_RS04655 0.66 -1.8 963,832 - RR41_RS04655 0.67 -0.1 963,832 - RR41_RS04655 0.67 -0.3 963,832 - RR41_RS04655 0.67 -0.9 963,836 + RR41_RS04655 0.67 -0.9 963,836 + RR41_RS04655 0.67 -0.9 963,836 + RR41_RS04655 0.67 +0.1 963,836 + RR41_RS04655 0.67 -2.0 963,837 - RR41_RS04655 0.67 -1.1 963,837 - RR41_RS04655 0.67 -1.1 963,852 + RR41_RS04655 0.68 -1.3 963,853 - RR41_RS04655 0.68 -1.8 963,873 + RR41_RS04655 0.70 -2.5 963,873 + RR41_RS04655 0.70 +0.7 963,913 + RR41_RS04655 0.73 +0.4 963,914 - RR41_RS04655 0.73 +0.1 963,914 - RR41_RS04655 0.73 -0.1 963,923 - RR41_RS04655 0.74 +0.7 963,953 + RR41_RS04655 0.76 +0.9 963,973 + RR41_RS04655 0.78 -0.9 963,974 - RR41_RS04655 0.78 -1.3 964,019 + RR41_RS04655 0.81 -0.2 964,020 - RR41_RS04655 0.81 -2.4 964,020 - RR41_RS04655 0.81 +0.7 964,096 + RR41_RS04655 0.87 -3.2 964,115 + RR41_RS04655 0.89 +1.7 964,116 - RR41_RS04655 0.89 -0.6 964,209 + +0.1 964,209 + +0.7 964,209 + +0.4 964,209 + -1.3 964,209 + +0.7 964,209 + -0.9 964,210 - +1.7 964,210 - -1.8 964,218 - +1.1 964,221 + +0.7 964,260 - +0.1 964,266 - -1.3 964,305 - +2.3 964,309 + +0.1 964,309 + -1.1 964,309 + -0.2 964,309 + +0.6 964,309 + +0.3 964,309 + -0.6 964,309 + +0.2 964,309 + -0.5 964,310 - +1.7 964,310 - -0.5 964,313 + -1.6 964,313 + -1.9 964,313 + +0.9 964,313 + -0.5 964,313 + +1.9 964,314 - -1.3 964,314 - +0.7 964,331 + +0.5 964,332 - -0.3 964,340 + +1.7 964,340 + +0.4 964,341 - -0.9 964,341 - -0.8 964,341 - -0.9 964,341 - -0.9 964,341 - -0.1 964,355 + -0.1 964,714 - RR41_RS04660 0.27 +0.4 964,714 - RR41_RS04660 0.27 +0.4 964,884 + RR41_RS04660 0.39 -0.8 964,885 - RR41_RS04660 0.39 -0.6 964,977 + RR41_RS04660 0.46 -0.9 964,978 - RR41_RS04660 0.46 +1.5 965,035 - RR41_RS04660 0.51 -0.6 965,082 + RR41_RS04660 0.54 -0.3
Or see this region's nucleotide sequence