Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS03955

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS03950 and RR41_RS03955 are separated by 76 nucleotidesRR41_RS03955 and RR41_RS03960 are separated by 49 nucleotidesRR41_RS03960 and RR41_RS03965 are separated by 117 nucleotides RR41_RS03950: RR41_RS03950 - siroheme synthase CysG, at 808,473 to 809,846 _RS03950 RR41_RS03955: RR41_RS03955 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 809,923 to 810,396 _RS03955 RR41_RS03960: RR41_RS03960 - helix-turn-helix transcriptional regulator, at 810,446 to 810,826 _RS03960 RR41_RS03965: RR41_RS03965 - flavodoxin family protein, at 810,944 to 811,504 _RS03965 Position (kb) 809 810 811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 808.937 kb on - strand, within RR41_RS03950at 808.937 kb on - strand, within RR41_RS03950at 809.006 kb on - strand, within RR41_RS03950at 809.022 kb on + strand, within RR41_RS03950at 809.023 kb on - strand, within RR41_RS03950at 809.114 kb on + strand, within RR41_RS03950at 809.127 kb on + strand, within RR41_RS03950at 809.180 kb on - strand, within RR41_RS03950at 809.235 kb on - strand, within RR41_RS03950at 809.272 kb on - strand, within RR41_RS03950at 809.297 kb on + strand, within RR41_RS03950at 809.297 kb on + strand, within RR41_RS03950at 809.298 kb on - strand, within RR41_RS03950at 809.298 kb on - strand, within RR41_RS03950at 809.352 kb on - strand, within RR41_RS03950at 809.462 kb on + strand, within RR41_RS03950at 809.487 kb on + strand, within RR41_RS03950at 809.487 kb on + strand, within RR41_RS03950at 809.518 kb on - strand, within RR41_RS03950at 809.540 kb on + strand, within RR41_RS03950at 809.552 kb on - strand, within RR41_RS03950at 809.608 kb on + strand, within RR41_RS03950at 809.609 kb on - strand, within RR41_RS03950at 809.616 kb on + strand, within RR41_RS03950at 809.616 kb on + strand, within RR41_RS03950at 809.616 kb on + strand, within RR41_RS03950at 809.616 kb on + strand, within RR41_RS03950at 809.616 kb on + strand, within RR41_RS03950at 809.617 kb on - strand, within RR41_RS03950at 809.617 kb on - strand, within RR41_RS03950at 809.643 kb on - strand, within RR41_RS03950at 809.643 kb on - strand, within RR41_RS03950at 809.681 kb on + strand, within RR41_RS03950at 809.801 kb on + strandat 809.854 kb on - strandat 809.854 kb on - strandat 809.859 kb on + strandat 809.876 kb on + strandat 809.876 kb on + strandat 809.877 kb on - strandat 809.899 kb on + strandat 809.900 kb on - strandat 809.900 kb on - strandat 809.903 kb on + strandat 809.964 kb on + strandat 809.964 kb on + strandat 809.965 kb on - strandat 809.970 kb on + strandat 809.971 kb on - strand, within RR41_RS03955at 809.973 kb on + strand, within RR41_RS03955at 809.973 kb on + strand, within RR41_RS03955at 809.973 kb on + strand, within RR41_RS03955at 809.973 kb on + strand, within RR41_RS03955at 809.985 kb on - strand, within RR41_RS03955at 810.014 kb on + strand, within RR41_RS03955at 810.015 kb on - strand, within RR41_RS03955at 810.026 kb on + strand, within RR41_RS03955at 810.132 kb on - strand, within RR41_RS03955at 810.168 kb on + strand, within RR41_RS03955at 810.168 kb on + strand, within RR41_RS03955at 810.203 kb on + strand, within RR41_RS03955at 810.203 kb on + strand, within RR41_RS03955at 810.329 kb on + strand, within RR41_RS03955at 810.329 kb on + strand, within RR41_RS03955at 810.333 kb on + strand, within RR41_RS03955at 810.353 kb on + strandat 810.354 kb on - strandat 810.356 kb on - strandat 810.419 kb on + strandat 810.419 kb on + strandat 810.474 kb on + strandat 810.474 kb on + strandat 810.576 kb on + strand, within RR41_RS03960at 810.577 kb on - strand, within RR41_RS03960at 810.732 kb on - strand, within RR41_RS03960at 810.826 kb on + strandat 810.862 kb on - strandat 810.932 kb on - strandat 810.949 kb on + strandat 810.955 kb on + strandat 810.955 kb on + strandat 810.970 kb on - strandat 810.972 kb on - strandat 811.000 kb on - strand, within RR41_RS03965at 811.060 kb on + strand, within RR41_RS03965at 811.061 kb on - strand, within RR41_RS03965at 811.094 kb on - strand, within RR41_RS03965at 811.127 kb on + strand, within RR41_RS03965at 811.127 kb on + strand, within RR41_RS03965at 811.127 kb on + strand, within RR41_RS03965at 811.127 kb on + strand, within RR41_RS03965at 811.128 kb on - strand, within RR41_RS03965at 811.135 kb on + strand, within RR41_RS03965at 811.284 kb on + strand, within RR41_RS03965at 811.285 kb on - strand, within RR41_RS03965at 811.337 kb on - strand, within RR41_RS03965at 811.363 kb on - strand, within RR41_RS03965

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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808,937 - RR41_RS03950 0.34 -0.0
808,937 - RR41_RS03950 0.34 -0.4
809,006 - RR41_RS03950 0.39 -2.1
809,022 + RR41_RS03950 0.40 +0.1
809,023 - RR41_RS03950 0.40 +0.6
809,114 + RR41_RS03950 0.47 +0.5
809,127 + RR41_RS03950 0.48 +0.6
809,180 - RR41_RS03950 0.51 -1.3
809,235 - RR41_RS03950 0.55 +0.6
809,272 - RR41_RS03950 0.58 -1.8
809,297 + RR41_RS03950 0.60 -1.8
809,297 + RR41_RS03950 0.60 -0.4
809,298 - RR41_RS03950 0.60 -1.6
809,298 - RR41_RS03950 0.60 -0.4
809,352 - RR41_RS03950 0.64 -1.6
809,462 + RR41_RS03950 0.72 -0.8
809,487 + RR41_RS03950 0.74 -1.6
809,487 + RR41_RS03950 0.74 -1.0
809,518 - RR41_RS03950 0.76 -0.4
809,540 + RR41_RS03950 0.78 -0.4
809,552 - RR41_RS03950 0.79 +1.9
809,608 + RR41_RS03950 0.83 -0.8
809,609 - RR41_RS03950 0.83 +3.1
809,616 + RR41_RS03950 0.83 -0.2
809,616 + RR41_RS03950 0.83 +0.4
809,616 + RR41_RS03950 0.83 -1.3
809,616 + RR41_RS03950 0.83 +1.6
809,616 + RR41_RS03950 0.83 +0.2
809,617 - RR41_RS03950 0.83 -0.1
809,617 - RR41_RS03950 0.83 -1.4
809,643 - RR41_RS03950 0.85 +1.8
809,643 - RR41_RS03950 0.85 -0.8
809,681 + RR41_RS03950 0.88 -0.8
809,801 + +0.4
809,854 - -0.4
809,854 - -0.4
809,859 + +0.6
809,876 + -1.1
809,876 + -0.1
809,877 - +0.2
809,899 + -1.3
809,900 - -1.0
809,900 - +0.1
809,903 + -1.0
809,964 + +0.2
809,964 + -0.0
809,965 - -3.1
809,970 + -1.4
809,971 - RR41_RS03955 0.10 -2.4
809,973 + RR41_RS03955 0.11 +0.7
809,973 + RR41_RS03955 0.11 -1.3
809,973 + RR41_RS03955 0.11 +0.2
809,973 + RR41_RS03955 0.11 -0.8
809,985 - RR41_RS03955 0.13 +0.3
810,014 + RR41_RS03955 0.19 -1.4
810,015 - RR41_RS03955 0.19 -2.0
810,026 + RR41_RS03955 0.22 -1.0
810,132 - RR41_RS03955 0.44 -0.4
810,168 + RR41_RS03955 0.52 -0.8
810,168 + RR41_RS03955 0.52 +1.6
810,203 + RR41_RS03955 0.59 +1.6
810,203 + RR41_RS03955 0.59 +1.9
810,329 + RR41_RS03955 0.86 -1.0
810,329 + RR41_RS03955 0.86 -2.0
810,333 + RR41_RS03955 0.86 -0.3
810,353 + +2.1
810,354 - +0.6
810,356 - -1.0
810,419 + -0.8
810,419 + -0.6
810,474 + +2.6
810,474 + -1.1
810,576 + RR41_RS03960 0.34 +0.3
810,577 - RR41_RS03960 0.34 -0.0
810,732 - RR41_RS03960 0.75 -0.2
810,826 + -0.0
810,862 - -0.3
810,932 - -0.4
810,949 + -1.0
810,955 + +1.6
810,955 + +0.1
810,970 - +2.1
810,972 - -0.8
811,000 - RR41_RS03965 0.10 -1.0
811,060 + RR41_RS03965 0.21 -2.5
811,061 - RR41_RS03965 0.21 +0.1
811,094 - RR41_RS03965 0.27 +0.6
811,127 + RR41_RS03965 0.33 +0.6
811,127 + RR41_RS03965 0.33 -0.0
811,127 + RR41_RS03965 0.33 +2.1
811,127 + RR41_RS03965 0.33 -0.4
811,128 - RR41_RS03965 0.33 +0.6
811,135 + RR41_RS03965 0.34 -1.6
811,284 + RR41_RS03965 0.61 +1.6
811,285 - RR41_RS03965 0.61 -1.0
811,337 - RR41_RS03965 0.70 -0.0
811,363 - RR41_RS03965 0.75 -0.1

Or see this region's nucleotide sequence