Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS03305 and RR41_RS03310 are separated by 254 nucleotides RR41_RS03310 and RR41_RS03315 are separated by 142 nucleotides RR41_RS03315 and RR41_RS03320 are separated by 10 nucleotides RR41_RS03320 and RR41_RS03325 are separated by 19 nucleotides
RR41_RS03305: RR41_RS03305 - translational GTPase TypA, at 679,178 to 681,013
_RS03305
RR41_RS03310: RR41_RS03310 - large conductance mechanosensitive channel protein MscL, at 681,268 to 681,699
_RS03310
RR41_RS03315: RR41_RS03315 - gamma-glutamylcyclotransferase, at 681,842 to 682,195
_RS03315
RR41_RS03320: RR41_RS03320 - peptidylprolyl isomerase, at 682,206 to 682,496
_RS03320
RR41_RS03325: RR41_RS03325 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 682,516 to 683,340
_RS03325
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.993 kb on - strand at 681.012 kb on - strand at 681.021 kb on + strand at 681.088 kb on - strand at 681.112 kb on + strand at 681.113 kb on - strand at 681.140 kb on + strand at 681.250 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.339 kb on + strand, within RR41_RS03310 at 681.340 kb on - strand, within RR41_RS03310 at 681.385 kb on - strand, within RR41_RS03310 at 681.408 kb on - strand, within RR41_RS03310 at 681.452 kb on + strand, within RR41_RS03310 at 681.453 kb on - strand, within RR41_RS03310 at 681.453 kb on - strand, within RR41_RS03310 at 681.483 kb on - strand, within RR41_RS03310 at 681.512 kb on + strand, within RR41_RS03310 at 681.513 kb on - strand, within RR41_RS03310 at 681.515 kb on + strand, within RR41_RS03310 at 681.516 kb on - strand, within RR41_RS03310 at 681.560 kb on + strand, within RR41_RS03310 at 681.578 kb on + strand, within RR41_RS03310 at 681.612 kb on + strand, within RR41_RS03310 at 681.663 kb on - strand at 681.697 kb on + strand at 681.698 kb on - strand at 681.732 kb on - strand at 681.732 kb on - strand at 681.746 kb on + strand at 681.749 kb on + strand at 681.750 kb on - strand at 681.756 kb on + strand at 681.757 kb on - strand at 681.771 kb on + strand at 681.804 kb on - strand at 681.810 kb on - strand at 681.813 kb on + strand at 681.821 kb on + strand at 681.858 kb on + strand at 681.859 kb on - strand at 681.859 kb on - strand at 681.896 kb on - strand, within RR41_RS03315 at 681.896 kb on - strand, within RR41_RS03315 at 681.901 kb on - strand, within RR41_RS03315 at 681.901 kb on - strand, within RR41_RS03315 at 681.936 kb on + strand, within RR41_RS03315 at 681.937 kb on - strand, within RR41_RS03315 at 681.953 kb on - strand, within RR41_RS03315 at 681.958 kb on - strand, within RR41_RS03315 at 681.990 kb on + strand, within RR41_RS03315 at 682.026 kb on - strand, within RR41_RS03315 at 682.033 kb on + strand, within RR41_RS03315 at 682.069 kb on - strand, within RR41_RS03315 at 682.069 kb on - strand, within RR41_RS03315 at 682.112 kb on - strand, within RR41_RS03315 at 682.112 kb on - strand, within RR41_RS03315 at 682.113 kb on + strand, within RR41_RS03315 at 682.133 kb on + strand, within RR41_RS03315 at 682.151 kb on + strand, within RR41_RS03315 at 682.151 kb on + strand, within RR41_RS03315 at 682.163 kb on - strand at 682.187 kb on + strand at 682.188 kb on - strand at 682.188 kb on - strand at 682.194 kb on - strand at 682.212 kb on + strand at 682.213 kb on - strand at 682.213 kb on - strand at 682.239 kb on + strand, within RR41_RS03320 at 682.278 kb on + strand, within RR41_RS03320 at 682.278 kb on + strand, within RR41_RS03320 at 682.278 kb on + strand, within RR41_RS03320 at 682.278 kb on + strand, within RR41_RS03320 at 682.279 kb on - strand, within RR41_RS03320 at 682.281 kb on + strand, within RR41_RS03320 at 682.281 kb on + strand, within RR41_RS03320 at 682.306 kb on - strand, within RR41_RS03320 at 682.377 kb on - strand, within RR41_RS03320 at 682.426 kb on - strand, within RR41_RS03320 at 682.426 kb on - strand, within RR41_RS03320 at 682.449 kb on + strand, within RR41_RS03320 at 682.458 kb on - strand, within RR41_RS03320 at 682.467 kb on + strand, within RR41_RS03320 at 682.468 kb on - strand at 682.473 kb on - strand at 682.473 kb on - strand at 682.562 kb on - strand at 682.595 kb on - strand at 682.611 kb on + strand, within RR41_RS03325 at 682.689 kb on - strand, within RR41_RS03325 at 682.712 kb on - strand, within RR41_RS03325 at 682.835 kb on + strand, within RR41_RS03325 at 682.835 kb on + strand, within RR41_RS03325 at 682.836 kb on - strand, within RR41_RS03325 at 682.836 kb on - strand, within RR41_RS03325 at 682.836 kb on - strand, within RR41_RS03325 at 682.836 kb on - strand, within RR41_RS03325 at 682.836 kb on - strand, within RR41_RS03325 at 682.836 kb on - strand, within RR41_RS03325 at 682.858 kb on + strand, within RR41_RS03325 at 682.858 kb on + strand, within RR41_RS03325 at 682.858 kb on + strand, within RR41_RS03325 at 682.886 kb on - strand, within RR41_RS03325 at 683.038 kb on + strand, within RR41_RS03325 at 683.038 kb on + strand, within RR41_RS03325 at 683.039 kb on - strand, within RR41_RS03325 at 683.116 kb on - strand, within RR41_RS03325 at 683.128 kb on + strand, within RR41_RS03325 at 683.189 kb on - strand, within RR41_RS03325
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 680,993 - -0.8 681,012 - -1.9 681,021 + -0.1 681,088 - -2.6 681,112 + -0.1 681,113 - +1.1 681,140 + -1.1 681,250 - -0.5 681,274 - +3.2 681,274 - -0.5 681,274 - -2.1 681,339 + RR41_RS03310 0.16 +0.7 681,340 - RR41_RS03310 0.17 -0.3 681,385 - RR41_RS03310 0.27 +1.1 681,408 - RR41_RS03310 0.32 -1.1 681,452 + RR41_RS03310 0.43 -2.1 681,453 - RR41_RS03310 0.43 -0.5 681,453 - RR41_RS03310 0.43 +0.8 681,483 - RR41_RS03310 0.50 -0.5 681,512 + RR41_RS03310 0.56 +0.2 681,513 - RR41_RS03310 0.57 +1.1 681,515 + RR41_RS03310 0.57 -0.1 681,516 - RR41_RS03310 0.57 -0.8 681,560 + RR41_RS03310 0.68 +0.9 681,578 + RR41_RS03310 0.72 -1.1 681,612 + RR41_RS03310 0.80 +0.5 681,663 - -0.8 681,697 + -0.4 681,698 - +0.7 681,732 - -0.5 681,732 - -1.3 681,746 + -1.1 681,749 + -1.3 681,750 - +0.7 681,756 + -2.3 681,757 - -0.8 681,771 + -1.3 681,804 - +0.6 681,810 - -1.0 681,813 + +0.5 681,821 + -2.2 681,858 + -0.1 681,859 - -1.7 681,859 - -0.3 681,896 - RR41_RS03315 0.15 +0.5 681,896 - RR41_RS03315 0.15 -0.7 681,901 - RR41_RS03315 0.17 -0.1 681,901 - RR41_RS03315 0.17 +0.2 681,936 + RR41_RS03315 0.27 -0.8 681,937 - RR41_RS03315 0.27 -1.5 681,953 - RR41_RS03315 0.31 -2.3 681,958 - RR41_RS03315 0.33 +0.7 681,990 + RR41_RS03315 0.42 +0.5 682,026 - RR41_RS03315 0.52 -1.0 682,033 + RR41_RS03315 0.54 -0.9 682,069 - RR41_RS03315 0.64 -0.5 682,069 - RR41_RS03315 0.64 -2.5 682,112 - RR41_RS03315 0.76 -0.5 682,112 - RR41_RS03315 0.76 +1.5 682,113 + RR41_RS03315 0.77 +1.5 682,133 + RR41_RS03315 0.82 -1.1 682,151 + RR41_RS03315 0.87 +0.0 682,151 + RR41_RS03315 0.87 -1.1 682,163 - +0.6 682,187 + +1.1 682,188 - +2.2 682,188 - +0.5 682,194 - +0.1 682,212 + -1.5 682,213 - +0.1 682,213 - +0.5 682,239 + RR41_RS03320 0.11 +0.7 682,278 + RR41_RS03320 0.25 -0.5 682,278 + RR41_RS03320 0.25 -0.1 682,278 + RR41_RS03320 0.25 -0.1 682,278 + RR41_RS03320 0.25 +0.2 682,279 - RR41_RS03320 0.25 +0.5 682,281 + RR41_RS03320 0.26 -0.5 682,281 + RR41_RS03320 0.26 -0.5 682,306 - RR41_RS03320 0.34 -0.1 682,377 - RR41_RS03320 0.59 -0.1 682,426 - RR41_RS03320 0.76 -1.1 682,426 - RR41_RS03320 0.76 +0.7 682,449 + RR41_RS03320 0.84 +0.5 682,458 - RR41_RS03320 0.87 -0.8 682,467 + RR41_RS03320 0.90 +1.0 682,468 - -2.4 682,473 - +0.9 682,473 - -2.3 682,562 - +0.5 682,595 - +0.5 682,611 + RR41_RS03325 0.12 -1.4 682,689 - RR41_RS03325 0.21 -1.5 682,712 - RR41_RS03325 0.24 -2.1 682,835 + RR41_RS03325 0.39 -1.2 682,835 + RR41_RS03325 0.39 -0.1 682,836 - RR41_RS03325 0.39 -0.3 682,836 - RR41_RS03325 0.39 +0.8 682,836 - RR41_RS03325 0.39 -1.0 682,836 - RR41_RS03325 0.39 +1.5 682,836 - RR41_RS03325 0.39 -0.5 682,836 - RR41_RS03325 0.39 +0.7 682,858 + RR41_RS03325 0.41 -1.3 682,858 + RR41_RS03325 0.41 +1.5 682,858 + RR41_RS03325 0.41 +0.7 682,886 - RR41_RS03325 0.45 +1.5 683,038 + RR41_RS03325 0.63 -3.0 683,038 + RR41_RS03325 0.63 +2.0 683,039 - RR41_RS03325 0.63 +0.5 683,116 - RR41_RS03325 0.73 -0.1 683,128 + RR41_RS03325 0.74 -0.8 683,189 - RR41_RS03325 0.82 +1.7
Or see this region's nucleotide sequence