Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS02480 and RR41_RS02485 are separated by 67 nucleotides RR41_RS02485 and RR41_RS02490 are separated by 117 nucleotides RR41_RS02490 and RR41_RS02495 are separated by 41 nucleotides RR41_RS02495 and RR41_RS02500 are separated by 18 nucleotides
RR41_RS02480: RR41_RS02480 - hypothetical protein, at 505,754 to 506,281
_RS02480
RR41_RS02485: RR41_RS02485 - 2OG-Fe(II) oxygenase, at 506,349 to 506,954
_RS02485
RR41_RS02490: RR41_RS02490 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 507,072 to 507,929
_RS02490
RR41_RS02495: RR41_RS02495 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 507,971 to 508,804
_RS02495
RR41_RS02500: RR41_RS02500 - hypothetical protein, at 508,823 to 509,932
_RS02500
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.086 kb on - strand, within RR41_RS02480 at 506.086 kb on - strand, within RR41_RS02480 at 506.135 kb on + strand, within RR41_RS02480 at 506.136 kb on - strand, within RR41_RS02480 at 506.136 kb on - strand, within RR41_RS02480 at 506.136 kb on - strand, within RR41_RS02480 at 506.160 kb on - strand, within RR41_RS02480 at 506.176 kb on + strand, within RR41_RS02480 at 506.176 kb on + strand, within RR41_RS02480 at 506.177 kb on - strand, within RR41_RS02480 at 506.177 kb on - strand, within RR41_RS02480 at 506.177 kb on - strand, within RR41_RS02480 at 506.180 kb on + strand, within RR41_RS02480 at 506.223 kb on - strand, within RR41_RS02480 at 506.226 kb on + strand, within RR41_RS02480 at 506.226 kb on + strand, within RR41_RS02480 at 506.227 kb on - strand, within RR41_RS02480 at 506.227 kb on - strand, within RR41_RS02480 at 506.227 kb on - strand, within RR41_RS02480 at 506.227 kb on - strand, within RR41_RS02480 at 506.281 kb on + strand at 506.282 kb on - strand at 506.282 kb on - strand at 506.282 kb on - strand at 506.282 kb on - strand at 506.282 kb on - strand at 506.312 kb on - strand at 506.335 kb on + strand at 506.351 kb on - strand at 506.388 kb on - strand at 506.390 kb on + strand at 506.415 kb on + strand, within RR41_RS02485 at 506.447 kb on + strand, within RR41_RS02485 at 506.448 kb on - strand, within RR41_RS02485 at 506.451 kb on + strand, within RR41_RS02485 at 506.452 kb on - strand, within RR41_RS02485 at 506.459 kb on + strand, within RR41_RS02485 at 506.474 kb on + strand, within RR41_RS02485 at 506.474 kb on + strand, within RR41_RS02485 at 506.474 kb on + strand, within RR41_RS02485 at 506.475 kb on - strand, within RR41_RS02485 at 506.487 kb on - strand, within RR41_RS02485 at 506.496 kb on - strand, within RR41_RS02485 at 506.502 kb on + strand, within RR41_RS02485 at 506.503 kb on - strand, within RR41_RS02485 at 506.544 kb on + strand, within RR41_RS02485 at 506.544 kb on + strand, within RR41_RS02485 at 506.545 kb on - strand, within RR41_RS02485 at 506.549 kb on - strand, within RR41_RS02485 at 506.552 kb on - strand, within RR41_RS02485 at 506.565 kb on - strand, within RR41_RS02485 at 506.565 kb on - strand, within RR41_RS02485 at 506.565 kb on - strand, within RR41_RS02485 at 506.565 kb on - strand, within RR41_RS02485 at 506.567 kb on + strand, within RR41_RS02485 at 506.568 kb on - strand, within RR41_RS02485 at 506.568 kb on - strand, within RR41_RS02485 at 506.568 kb on - strand, within RR41_RS02485 at 506.602 kb on - strand, within RR41_RS02485 at 506.625 kb on - strand, within RR41_RS02485 at 506.626 kb on + strand, within RR41_RS02485 at 506.627 kb on - strand, within RR41_RS02485 at 506.646 kb on + strand, within RR41_RS02485 at 506.647 kb on - strand, within RR41_RS02485 at 506.655 kb on - strand, within RR41_RS02485 at 506.700 kb on + strand, within RR41_RS02485 at 506.709 kb on + strand, within RR41_RS02485 at 506.710 kb on - strand, within RR41_RS02485 at 506.754 kb on - strand, within RR41_RS02485 at 506.754 kb on - strand, within RR41_RS02485 at 506.754 kb on - strand, within RR41_RS02485 at 506.754 kb on - strand, within RR41_RS02485 at 506.771 kb on + strand, within RR41_RS02485 at 506.772 kb on - strand, within RR41_RS02485 at 506.847 kb on - strand, within RR41_RS02485 at 506.847 kb on - strand, within RR41_RS02485 at 506.847 kb on - strand, within RR41_RS02485 at 506.863 kb on + strand, within RR41_RS02485 at 506.864 kb on - strand, within RR41_RS02485 at 506.864 kb on - strand, within RR41_RS02485 at 506.899 kb on - strand at 506.899 kb on - strand at 506.954 kb on + strand at 506.954 kb on + strand at 506.954 kb on + strand at 506.955 kb on - strand at 506.955 kb on - strand at 506.955 kb on - strand at 506.955 kb on - strand at 506.955 kb on - strand at 506.955 kb on - strand at 506.955 kb on - strand at 506.956 kb on + strand at 506.956 kb on + strand at 506.956 kb on + strand at 506.956 kb on + strand at 506.957 kb on - strand at 506.957 kb on - strand at 506.957 kb on - strand at 506.957 kb on - strand at 506.974 kb on - strand at 506.998 kb on - strand at 507.013 kb on + strand at 507.037 kb on + strand at 507.042 kb on + strand at 507.042 kb on + strand at 507.042 kb on + strand at 507.043 kb on - strand at 507.043 kb on - strand at 507.062 kb on + strand at 507.062 kb on + strand at 507.116 kb on + strand at 507.154 kb on + strand at 507.162 kb on - strand, within RR41_RS02490 at 507.167 kb on + strand, within RR41_RS02490 at 507.182 kb on + strand, within RR41_RS02490 at 507.211 kb on - strand, within RR41_RS02490 at 507.260 kb on + strand, within RR41_RS02490 at 507.274 kb on + strand, within RR41_RS02490 at 507.274 kb on + strand, within RR41_RS02490 at 507.275 kb on - strand, within RR41_RS02490 at 507.328 kb on + strand, within RR41_RS02490 at 507.328 kb on + strand, within RR41_RS02490 at 507.346 kb on + strand, within RR41_RS02490 at 507.362 kb on + strand, within RR41_RS02490 at 507.362 kb on + strand, within RR41_RS02490 at 507.430 kb on + strand, within RR41_RS02490 at 507.430 kb on + strand, within RR41_RS02490 at 507.451 kb on + strand, within RR41_RS02490 at 507.451 kb on + strand, within RR41_RS02490 at 507.452 kb on - strand, within RR41_RS02490 at 507.463 kb on + strand, within RR41_RS02490 at 507.471 kb on - strand, within RR41_RS02490 at 507.513 kb on + strand, within RR41_RS02490 at 507.513 kb on + strand, within RR41_RS02490 at 507.514 kb on - strand, within RR41_RS02490 at 507.514 kb on - strand, within RR41_RS02490 at 507.514 kb on - strand, within RR41_RS02490 at 507.514 kb on - strand, within RR41_RS02490 at 507.587 kb on - strand, within RR41_RS02490 at 507.587 kb on - strand, within RR41_RS02490 at 507.623 kb on - strand, within RR41_RS02490 at 507.677 kb on + strand, within RR41_RS02490 at 507.742 kb on + strand, within RR41_RS02490 at 507.781 kb on + strand, within RR41_RS02490 at 507.781 kb on + strand, within RR41_RS02490 at 507.781 kb on + strand, within RR41_RS02490 at 507.782 kb on - strand, within RR41_RS02490 at 507.782 kb on - strand, within RR41_RS02490 at 507.802 kb on + strand, within RR41_RS02490 at 507.805 kb on + strand, within RR41_RS02490 at 507.806 kb on - strand, within RR41_RS02490 at 507.806 kb on - strand, within RR41_RS02490 at 507.808 kb on + strand, within RR41_RS02490 at 507.808 kb on + strand, within RR41_RS02490 at 507.808 kb on + strand, within RR41_RS02490 at 507.853 kb on + strand at 507.853 kb on + strand at 507.853 kb on + strand at 507.853 kb on + strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.862 kb on + strand at 507.874 kb on + strand at 507.874 kb on + strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.875 kb on - strand at 507.878 kb on + strand at 507.878 kb on + strand at 507.878 kb on + strand at 507.878 kb on + strand at 507.879 kb on - strand at 507.879 kb on - strand at 507.879 kb on - strand at 507.930 kb on + strand at 507.930 kb on + strand at 507.930 kb on + strand at 507.934 kb on + strand at 507.985 kb on + strand at 508.009 kb on + strand at 508.740 kb on - strand at 508.802 kb on + strand at 508.808 kb on + strand at 508.828 kb on + strand at 508.829 kb on - strand at 508.836 kb on + strand at 508.854 kb on + strand at 508.854 kb on + strand at 508.925 kb on + strand at 508.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 506,086 - RR41_RS02480 0.63 +0.1 506,086 - RR41_RS02480 0.63 -2.2 506,135 + RR41_RS02480 0.72 -2.5 506,136 - RR41_RS02480 0.72 +0.9 506,136 - RR41_RS02480 0.72 -0.2 506,136 - RR41_RS02480 0.72 +0.3 506,160 - RR41_RS02480 0.77 -1.3 506,176 + RR41_RS02480 0.80 +0.3 506,176 + RR41_RS02480 0.80 -2.2 506,177 - RR41_RS02480 0.80 -1.0 506,177 - RR41_RS02480 0.80 +0.3 506,177 - RR41_RS02480 0.80 -0.5 506,180 + RR41_RS02480 0.81 -1.8 506,223 - RR41_RS02480 0.89 -0.5 506,226 + RR41_RS02480 0.89 -0.2 506,226 + RR41_RS02480 0.89 -0.4 506,227 - RR41_RS02480 0.90 -0.7 506,227 - RR41_RS02480 0.90 +0.5 506,227 - RR41_RS02480 0.90 +0.2 506,227 - RR41_RS02480 0.90 +1.0 506,281 + -1.2 506,282 - +0.0 506,282 - +0.5 506,282 - -2.9 506,282 - +1.3 506,282 - -2.4 506,312 - -0.2 506,335 + -2.0 506,351 - +0.2 506,388 - +1.1 506,390 + -0.7 506,415 + RR41_RS02485 0.11 -0.2 506,447 + RR41_RS02485 0.16 -1.7 506,448 - RR41_RS02485 0.16 +0.5 506,451 + RR41_RS02485 0.17 -1.2 506,452 - RR41_RS02485 0.17 +1.3 506,459 + RR41_RS02485 0.18 -1.7 506,474 + RR41_RS02485 0.21 +0.3 506,474 + RR41_RS02485 0.21 +0.9 506,474 + RR41_RS02485 0.21 -1.0 506,475 - RR41_RS02485 0.21 -1.2 506,487 - RR41_RS02485 0.23 -0.2 506,496 - RR41_RS02485 0.24 -1.0 506,502 + RR41_RS02485 0.25 +0.3 506,503 - RR41_RS02485 0.25 -1.5 506,544 + RR41_RS02485 0.32 -1.2 506,544 + RR41_RS02485 0.32 +0.8 506,545 - RR41_RS02485 0.32 +1.1 506,549 - RR41_RS02485 0.33 -0.9 506,552 - RR41_RS02485 0.33 -0.7 506,565 - RR41_RS02485 0.36 +2.0 506,565 - RR41_RS02485 0.36 -0.7 506,565 - RR41_RS02485 0.36 -0.5 506,565 - RR41_RS02485 0.36 +1.8 506,567 + RR41_RS02485 0.36 +0.9 506,568 - RR41_RS02485 0.36 -2.5 506,568 - RR41_RS02485 0.36 -0.5 506,568 - RR41_RS02485 0.36 -0.7 506,602 - RR41_RS02485 0.42 -2.7 506,625 - RR41_RS02485 0.46 +0.6 506,626 + RR41_RS02485 0.46 -2.0 506,627 - RR41_RS02485 0.46 -0.2 506,646 + RR41_RS02485 0.49 -0.7 506,647 - RR41_RS02485 0.49 +0.3 506,655 - RR41_RS02485 0.50 -1.2 506,700 + RR41_RS02485 0.58 +0.4 506,709 + RR41_RS02485 0.59 -0.6 506,710 - RR41_RS02485 0.60 +0.3 506,754 - RR41_RS02485 0.67 +1.1 506,754 - RR41_RS02485 0.67 -1.2 506,754 - RR41_RS02485 0.67 +0.3 506,754 - RR41_RS02485 0.67 -1.4 506,771 + RR41_RS02485 0.70 +1.3 506,772 - RR41_RS02485 0.70 +3.7 506,847 - RR41_RS02485 0.82 +0.3 506,847 - RR41_RS02485 0.82 -2.0 506,847 - RR41_RS02485 0.82 -0.2 506,863 + RR41_RS02485 0.85 +0.9 506,864 - RR41_RS02485 0.85 -0.6 506,864 - RR41_RS02485 0.85 -1.2 506,899 - -2.2 506,899 - -1.8 506,954 + -1.8 506,954 + -0.8 506,954 + +1.0 506,955 - -1.6 506,955 - +2.3 506,955 - -3.1 506,955 - -0.5 506,955 - -1.1 506,955 - +0.4 506,955 - +1.3 506,956 + -0.7 506,956 + -2.2 506,956 + -0.7 506,956 + -1.2 506,957 - -1.0 506,957 - +1.3 506,957 - -3.0 506,957 - -1.8 506,974 - -2.0 506,998 - +2.2 507,013 + -0.8 507,037 + -0.4 507,042 + -0.7 507,042 + -1.1 507,042 + +1.0 507,043 - +0.8 507,043 - +1.3 507,062 + -2.0 507,062 + -0.6 507,116 + +0.3 507,154 + -0.2 507,162 - RR41_RS02490 0.10 -0.7 507,167 + RR41_RS02490 0.11 -1.2 507,182 + RR41_RS02490 0.13 -1.6 507,211 - RR41_RS02490 0.16 -0.2 507,260 + RR41_RS02490 0.22 -3.1 507,274 + RR41_RS02490 0.24 -1.5 507,274 + RR41_RS02490 0.24 -1.2 507,275 - RR41_RS02490 0.24 -0.7 507,328 + RR41_RS02490 0.30 +0.3 507,328 + RR41_RS02490 0.30 -1.4 507,346 + RR41_RS02490 0.32 -0.3 507,362 + RR41_RS02490 0.34 -0.7 507,362 + RR41_RS02490 0.34 +0.3 507,430 + RR41_RS02490 0.42 -1.0 507,430 + RR41_RS02490 0.42 -1.4 507,451 + RR41_RS02490 0.44 -2.5 507,451 + RR41_RS02490 0.44 -1.8 507,452 - RR41_RS02490 0.44 +1.3 507,463 + RR41_RS02490 0.46 -1.7 507,471 - RR41_RS02490 0.47 -2.1 507,513 + RR41_RS02490 0.51 -0.7 507,513 + RR41_RS02490 0.51 +0.0 507,514 - RR41_RS02490 0.52 +0.3 507,514 - RR41_RS02490 0.52 -0.4 507,514 - RR41_RS02490 0.52 +0.3 507,514 - RR41_RS02490 0.52 -2.0 507,587 - RR41_RS02490 0.60 -2.0 507,587 - RR41_RS02490 0.60 +0.3 507,623 - RR41_RS02490 0.64 -0.7 507,677 + RR41_RS02490 0.71 -1.5 507,742 + RR41_RS02490 0.78 -0.5 507,781 + RR41_RS02490 0.83 -1.5 507,781 + RR41_RS02490 0.83 -1.5 507,781 + RR41_RS02490 0.83 -1.5 507,782 - RR41_RS02490 0.83 -1.8 507,782 - RR41_RS02490 0.83 +0.5 507,802 + RR41_RS02490 0.85 -0.4 507,805 + RR41_RS02490 0.85 -2.4 507,806 - RR41_RS02490 0.86 -1.2 507,806 - RR41_RS02490 0.86 -2.0 507,808 + RR41_RS02490 0.86 -0.7 507,808 + RR41_RS02490 0.86 -1.7 507,808 + RR41_RS02490 0.86 +0.3 507,853 + -2.1 507,853 + -1.1 507,853 + +0.3 507,853 + -1.5 507,854 - -2.4 507,854 - +0.3 507,854 - -1.6 507,854 - -1.5 507,854 - -1.1 507,854 - -1.7 507,862 + -0.3 507,874 + +0.3 507,874 + -3.2 507,875 - -1.2 507,875 - -0.7 507,875 - -1.0 507,875 - -0.7 507,875 - -2.1 507,875 - -1.5 507,875 - +0.1 507,875 - +0.1 507,875 - -0.5 507,875 - -3.1 507,875 - +0.0 507,878 + +2.3 507,878 + -2.5 507,878 + +1.1 507,878 + -1.3 507,879 - -1.2 507,879 - -0.2 507,879 - -0.2 507,930 + -1.5 507,930 + -2.0 507,930 + +0.2 507,934 + -0.3 507,985 + -3.3 508,009 + -1.0 508,740 - -1.5 508,802 + -0.2 508,808 + +0.8 508,828 + -1.6 508,829 - -0.8 508,836 + +0.0 508,854 + -2.2 508,854 + -1.5 508,925 + +0.2 508,926 - -0.1
Or see this region's nucleotide sequence