Experiment: MHII_biocarbonate_serum_Chelated; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS02455 and RR41_RS02460 are separated by 57 nucleotides RR41_RS02460 and RR41_RS02465 are separated by 211 nucleotides
RR41_RS02455: RR41_RS02455 - lytic transglycosylase domain-containing protein, at 500,110 to 502,053
_RS02455
RR41_RS02460: RR41_RS02460 - hypothetical protein, at 502,111 to 502,773
_RS02460
RR41_RS02465: RR41_RS02465 - malate dehydrogenase, at 502,985 to 503,971
_RS02465
Position (kb) 502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 501.127 kb on + strand, within RR41_RS02455 at 501.128 kb on - strand, within RR41_RS02455 at 501.163 kb on - strand, within RR41_RS02455 at 501.165 kb on + strand, within RR41_RS02455 at 501.165 kb on + strand, within RR41_RS02455 at 501.165 kb on + strand, within RR41_RS02455 at 501.166 kb on - strand, within RR41_RS02455 at 501.166 kb on - strand, within RR41_RS02455 at 501.189 kb on + strand, within RR41_RS02455 at 501.189 kb on + strand, within RR41_RS02455 at 501.189 kb on + strand, within RR41_RS02455 at 501.189 kb on + strand, within RR41_RS02455 at 501.189 kb on + strand, within RR41_RS02455 at 501.190 kb on - strand, within RR41_RS02455 at 501.196 kb on - strand, within RR41_RS02455 at 501.223 kb on + strand, within RR41_RS02455 at 501.224 kb on - strand, within RR41_RS02455 at 501.251 kb on + strand, within RR41_RS02455 at 501.252 kb on - strand, within RR41_RS02455 at 501.257 kb on + strand, within RR41_RS02455 at 501.257 kb on + strand, within RR41_RS02455 at 501.258 kb on - strand, within RR41_RS02455 at 501.262 kb on + strand, within RR41_RS02455 at 501.263 kb on - strand, within RR41_RS02455 at 501.263 kb on - strand, within RR41_RS02455 at 501.263 kb on - strand, within RR41_RS02455 at 501.264 kb on + strand, within RR41_RS02455 at 501.264 kb on + strand, within RR41_RS02455 at 501.264 kb on + strand, within RR41_RS02455 at 501.265 kb on - strand, within RR41_RS02455 at 501.279 kb on + strand, within RR41_RS02455 at 501.279 kb on + strand, within RR41_RS02455 at 501.279 kb on + strand, within RR41_RS02455 at 501.280 kb on - strand, within RR41_RS02455 at 501.333 kb on + strand, within RR41_RS02455 at 501.333 kb on + strand, within RR41_RS02455 at 501.334 kb on - strand, within RR41_RS02455 at 501.345 kb on + strand, within RR41_RS02455 at 501.346 kb on - strand, within RR41_RS02455 at 501.351 kb on - strand, within RR41_RS02455 at 501.376 kb on + strand, within RR41_RS02455 at 501.376 kb on + strand, within RR41_RS02455 at 501.376 kb on + strand, within RR41_RS02455 at 501.376 kb on + strand, within RR41_RS02455 at 501.376 kb on + strand, within RR41_RS02455 at 501.376 kb on + strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.377 kb on - strand, within RR41_RS02455 at 501.379 kb on - strand, within RR41_RS02455 at 501.415 kb on + strand, within RR41_RS02455 at 501.440 kb on + strand, within RR41_RS02455 at 501.441 kb on - strand, within RR41_RS02455 at 501.441 kb on - strand, within RR41_RS02455 at 501.478 kb on + strand, within RR41_RS02455 at 501.493 kb on + strand, within RR41_RS02455 at 501.507 kb on + strand, within RR41_RS02455 at 501.508 kb on - strand, within RR41_RS02455 at 501.517 kb on - strand, within RR41_RS02455 at 501.522 kb on + strand, within RR41_RS02455 at 501.523 kb on - strand, within RR41_RS02455 at 501.528 kb on + strand, within RR41_RS02455 at 501.528 kb on + strand, within RR41_RS02455 at 501.529 kb on - strand, within RR41_RS02455 at 501.529 kb on - strand, within RR41_RS02455 at 501.529 kb on - strand, within RR41_RS02455 at 501.532 kb on + strand, within RR41_RS02455 at 501.532 kb on + strand, within RR41_RS02455 at 501.532 kb on + strand, within RR41_RS02455 at 501.532 kb on + strand, within RR41_RS02455 at 501.532 kb on + strand, within RR41_RS02455 at 501.533 kb on - strand, within RR41_RS02455 at 501.533 kb on - strand, within RR41_RS02455 at 501.538 kb on + strand, within RR41_RS02455 at 501.539 kb on - strand, within RR41_RS02455 at 501.539 kb on - strand, within RR41_RS02455 at 501.553 kb on - strand, within RR41_RS02455 at 501.567 kb on - strand, within RR41_RS02455 at 501.574 kb on - strand, within RR41_RS02455 at 501.577 kb on + strand, within RR41_RS02455 at 501.577 kb on + strand, within RR41_RS02455 at 501.577 kb on + strand, within RR41_RS02455 at 501.578 kb on - strand, within RR41_RS02455 at 501.578 kb on - strand, within RR41_RS02455 at 501.578 kb on - strand, within RR41_RS02455 at 501.578 kb on - strand, within RR41_RS02455 at 501.578 kb on - strand, within RR41_RS02455 at 501.614 kb on + strand, within RR41_RS02455 at 501.659 kb on + strand, within RR41_RS02455 at 501.659 kb on + strand, within RR41_RS02455 at 501.659 kb on + strand, within RR41_RS02455 at 501.659 kb on + strand, within RR41_RS02455 at 501.659 kb on + strand, within RR41_RS02455 at 501.659 kb on + strand, within RR41_RS02455 at 501.660 kb on - strand, within RR41_RS02455 at 501.660 kb on - strand, within RR41_RS02455 at 501.660 kb on - strand, within RR41_RS02455 at 501.676 kb on - strand, within RR41_RS02455 at 501.730 kb on + strand, within RR41_RS02455 at 501.730 kb on + strand, within RR41_RS02455 at 501.730 kb on + strand, within RR41_RS02455 at 501.733 kb on - strand, within RR41_RS02455 at 501.746 kb on + strand, within RR41_RS02455 at 501.746 kb on + strand, within RR41_RS02455 at 501.747 kb on - strand, within RR41_RS02455 at 501.765 kb on + strand, within RR41_RS02455 at 501.785 kb on - strand, within RR41_RS02455 at 501.809 kb on + strand, within RR41_RS02455 at 501.809 kb on + strand, within RR41_RS02455 at 501.809 kb on + strand, within RR41_RS02455 at 501.810 kb on - strand, within RR41_RS02455 at 501.813 kb on + strand, within RR41_RS02455 at 501.813 kb on + strand, within RR41_RS02455 at 501.813 kb on + strand, within RR41_RS02455 at 501.814 kb on - strand, within RR41_RS02455 at 501.814 kb on - strand, within RR41_RS02455 at 501.816 kb on + strand, within RR41_RS02455 at 501.827 kb on + strand, within RR41_RS02455 at 501.842 kb on - strand, within RR41_RS02455 at 501.842 kb on - strand, within RR41_RS02455 at 501.844 kb on - strand, within RR41_RS02455 at 501.884 kb on - strand at 501.907 kb on + strand at 501.908 kb on - strand at 501.909 kb on + strand at 501.910 kb on - strand at 501.943 kb on + strand at 501.944 kb on - strand at 501.976 kb on + strand at 501.986 kb on + strand at 501.986 kb on + strand at 501.986 kb on + strand at 501.987 kb on - strand at 501.987 kb on - strand at 501.989 kb on + strand at 501.989 kb on + strand at 501.990 kb on - strand at 501.990 kb on - strand at 502.011 kb on - strand at 502.013 kb on + strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.020 kb on + strand at 502.020 kb on + strand at 502.020 kb on + strand at 502.021 kb on - strand at 502.052 kb on - strand at 502.058 kb on - strand at 502.058 kb on - strand at 502.104 kb on + strand at 502.109 kb on - strand at 502.117 kb on + strand at 502.117 kb on + strand at 502.118 kb on - strand at 502.119 kb on + strand at 502.119 kb on + strand at 502.200 kb on - strand, within RR41_RS02460 at 502.216 kb on - strand, within RR41_RS02460 at 502.228 kb on + strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.241 kb on + strand, within RR41_RS02460 at 502.242 kb on - strand, within RR41_RS02460 at 502.268 kb on + strand, within RR41_RS02460 at 502.279 kb on - strand, within RR41_RS02460 at 502.293 kb on + strand, within RR41_RS02460 at 502.293 kb on + strand, within RR41_RS02460 at 502.294 kb on - strand, within RR41_RS02460 at 502.377 kb on + strand, within RR41_RS02460 at 502.377 kb on + strand, within RR41_RS02460 at 502.378 kb on - strand, within RR41_RS02460 at 502.378 kb on - strand, within RR41_RS02460 at 502.378 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.536 kb on + strand, within RR41_RS02460 at 502.542 kb on - strand, within RR41_RS02460 at 502.554 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.576 kb on - strand, within RR41_RS02460 at 502.576 kb on - strand, within RR41_RS02460 at 502.576 kb on - strand, within RR41_RS02460 at 502.580 kb on + strand, within RR41_RS02460 at 502.581 kb on - strand, within RR41_RS02460 at 502.581 kb on - strand, within RR41_RS02460 at 502.613 kb on + strand, within RR41_RS02460 at 502.613 kb on + strand, within RR41_RS02460 at 502.627 kb on - strand, within RR41_RS02460 at 502.664 kb on + strand, within RR41_RS02460 at 502.668 kb on - strand, within RR41_RS02460 at 502.705 kb on + strand, within RR41_RS02460 at 502.705 kb on + strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.707 kb on + strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.734 kb on + strand at 502.734 kb on + strand at 502.759 kb on - strand at 502.769 kb on - strand at 502.772 kb on - strand at 502.772 kb on - strand at 502.819 kb on + strand at 502.825 kb on + strand at 502.833 kb on - strand at 502.877 kb on + strand at 502.877 kb on + strand at 502.878 kb on - strand at 502.899 kb on - strand at 502.919 kb on + strand at 502.920 kb on - strand at 502.934 kb on - strand at 502.950 kb on + strand at 502.983 kb on - strand at 503.370 kb on + strand, within RR41_RS02465 at 503.561 kb on - strand, within RR41_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C remove 501,127 + RR41_RS02455 0.52 -0.2 501,128 - RR41_RS02455 0.52 -2.1 501,163 - RR41_RS02455 0.54 -0.7 501,165 + RR41_RS02455 0.54 -0.2 501,165 + RR41_RS02455 0.54 -1.0 501,165 + RR41_RS02455 0.54 -2.4 501,166 - RR41_RS02455 0.54 -1.7 501,166 - RR41_RS02455 0.54 +1.3 501,189 + RR41_RS02455 0.56 +0.5 501,189 + RR41_RS02455 0.56 -0.5 501,189 + RR41_RS02455 0.56 -0.7 501,189 + RR41_RS02455 0.56 -1.2 501,189 + RR41_RS02455 0.56 +0.2 501,190 - RR41_RS02455 0.56 -3.2 501,196 - RR41_RS02455 0.56 -2.6 501,223 + RR41_RS02455 0.57 -2.0 501,224 - RR41_RS02455 0.57 +0.3 501,251 + RR41_RS02455 0.59 -1.5 501,252 - RR41_RS02455 0.59 -1.0 501,257 + RR41_RS02455 0.59 -0.7 501,257 + RR41_RS02455 0.59 +0.1 501,258 - RR41_RS02455 0.59 -2.4 501,262 + RR41_RS02455 0.59 -0.7 501,263 - RR41_RS02455 0.59 -3.1 501,263 - RR41_RS02455 0.59 -0.4 501,263 - RR41_RS02455 0.59 -0.2 501,264 + RR41_RS02455 0.59 -2.5 501,264 + RR41_RS02455 0.59 +0.3 501,264 + RR41_RS02455 0.59 -0.1 501,265 - RR41_RS02455 0.59 -0.4 501,279 + RR41_RS02455 0.60 -2.4 501,279 + RR41_RS02455 0.60 -1.7 501,279 + RR41_RS02455 0.60 -2.8 501,280 - RR41_RS02455 0.60 -1.2 501,333 + RR41_RS02455 0.63 -2.5 501,333 + RR41_RS02455 0.63 -0.2 501,334 - RR41_RS02455 0.63 -2.5 501,345 + RR41_RS02455 0.64 -0.1 501,346 - RR41_RS02455 0.64 -0.7 501,351 - RR41_RS02455 0.64 -2.5 501,376 + RR41_RS02455 0.65 +0.5 501,376 + RR41_RS02455 0.65 +0.6 501,376 + RR41_RS02455 0.65 -1.5 501,376 + RR41_RS02455 0.65 -0.1 501,376 + RR41_RS02455 0.65 -1.5 501,376 + RR41_RS02455 0.65 -0.5 501,377 - RR41_RS02455 0.65 -0.1 501,377 - RR41_RS02455 0.65 -2.0 501,377 - RR41_RS02455 0.65 -0.4 501,377 - RR41_RS02455 0.65 -0.8 501,377 - RR41_RS02455 0.65 -0.3 501,377 - RR41_RS02455 0.65 -0.2 501,377 - RR41_RS02455 0.65 +0.3 501,377 - RR41_RS02455 0.65 -2.8 501,379 - RR41_RS02455 0.65 -1.0 501,415 + RR41_RS02455 0.67 +0.2 501,440 + RR41_RS02455 0.68 -1.0 501,441 - RR41_RS02455 0.68 -1.8 501,441 - RR41_RS02455 0.68 -0.0 501,478 + RR41_RS02455 0.70 -0.8 501,493 + RR41_RS02455 0.71 -2.6 501,507 + RR41_RS02455 0.72 -0.9 501,508 - RR41_RS02455 0.72 +0.3 501,517 - RR41_RS02455 0.72 -0.8 501,522 + RR41_RS02455 0.73 -0.1 501,523 - RR41_RS02455 0.73 +0.0 501,528 + RR41_RS02455 0.73 +0.8 501,528 + RR41_RS02455 0.73 -1.2 501,529 - RR41_RS02455 0.73 +1.0 501,529 - RR41_RS02455 0.73 +1.8 501,529 - RR41_RS02455 0.73 -1.4 501,532 + RR41_RS02455 0.73 -1.2 501,532 + RR41_RS02455 0.73 -1.8 501,532 + RR41_RS02455 0.73 -2.0 501,532 + RR41_RS02455 0.73 +0.2 501,532 + RR41_RS02455 0.73 -1.2 501,533 - RR41_RS02455 0.73 -1.8 501,533 - RR41_RS02455 0.73 -2.7 501,538 + RR41_RS02455 0.73 -0.1 501,539 - RR41_RS02455 0.74 +0.9 501,539 - RR41_RS02455 0.74 +0.0 501,553 - RR41_RS02455 0.74 -2.4 501,567 - RR41_RS02455 0.75 +0.9 501,574 - RR41_RS02455 0.75 -0.2 501,577 + RR41_RS02455 0.75 +0.9 501,577 + RR41_RS02455 0.75 -1.5 501,577 + RR41_RS02455 0.75 -3.0 501,578 - RR41_RS02455 0.76 -3.0 501,578 - RR41_RS02455 0.76 -1.3 501,578 - RR41_RS02455 0.76 -1.7 501,578 - RR41_RS02455 0.76 -1.2 501,578 - RR41_RS02455 0.76 -0.2 501,614 + RR41_RS02455 0.77 -2.0 501,659 + RR41_RS02455 0.80 -2.5 501,659 + RR41_RS02455 0.80 -0.4 501,659 + RR41_RS02455 0.80 -1.8 501,659 + RR41_RS02455 0.80 -1.7 501,659 + RR41_RS02455 0.80 +0.3 501,659 + RR41_RS02455 0.80 +1.3 501,660 - RR41_RS02455 0.80 -1.0 501,660 - RR41_RS02455 0.80 -1.5 501,660 - RR41_RS02455 0.80 -1.7 501,676 - RR41_RS02455 0.81 +1.1 501,730 + RR41_RS02455 0.83 -1.6 501,730 + RR41_RS02455 0.83 -0.4 501,730 + RR41_RS02455 0.83 -2.0 501,733 - RR41_RS02455 0.83 -0.8 501,746 + RR41_RS02455 0.84 -0.5 501,746 + RR41_RS02455 0.84 -1.2 501,747 - RR41_RS02455 0.84 -0.5 501,765 + RR41_RS02455 0.85 -1.8 501,785 - RR41_RS02455 0.86 -1.0 501,809 + RR41_RS02455 0.87 -1.1 501,809 + RR41_RS02455 0.87 +0.1 501,809 + RR41_RS02455 0.87 -0.4 501,810 - RR41_RS02455 0.87 -0.2 501,813 + RR41_RS02455 0.88 -0.8 501,813 + RR41_RS02455 0.88 -2.5 501,813 + RR41_RS02455 0.88 -1.7 501,814 - RR41_RS02455 0.88 -1.7 501,814 - RR41_RS02455 0.88 +0.0 501,816 + RR41_RS02455 0.88 -0.2 501,827 + RR41_RS02455 0.88 -0.6 501,842 - RR41_RS02455 0.89 -2.6 501,842 - RR41_RS02455 0.89 -0.1 501,844 - RR41_RS02455 0.89 +0.2 501,884 - -0.2 501,907 + -1.2 501,908 - -2.2 501,909 + +0.3 501,910 - -0.7 501,943 + -2.5 501,944 - -1.4 501,976 + -1.7 501,986 + -2.2 501,986 + +0.2 501,986 + -2.5 501,987 - -3.1 501,987 - -0.9 501,989 + -1.0 501,989 + -2.8 501,990 - -1.8 501,990 - +0.6 502,011 - -1.4 502,013 + -0.7 502,014 - -0.2 502,014 - -1.5 502,014 - +1.3 502,014 - -1.2 502,014 - -1.7 502,014 - +0.3 502,020 + +0.3 502,020 + -1.1 502,020 + -2.8 502,021 - +2.8 502,052 - +0.1 502,058 - +0.3 502,058 - -1.6 502,104 + -1.9 502,109 - -1.5 502,117 + -1.7 502,117 + +0.0 502,118 - -2.7 502,119 + -1.5 502,119 + -1.7 502,200 - RR41_RS02460 0.13 -3.7 502,216 - RR41_RS02460 0.16 -2.1 502,228 + RR41_RS02460 0.18 -0.8 502,229 - RR41_RS02460 0.18 -0.7 502,229 - RR41_RS02460 0.18 -1.0 502,229 - RR41_RS02460 0.18 -0.7 502,229 - RR41_RS02460 0.18 -2.2 502,241 + RR41_RS02460 0.20 -1.1 502,242 - RR41_RS02460 0.20 -0.7 502,268 + RR41_RS02460 0.24 -1.7 502,279 - RR41_RS02460 0.25 -0.6 502,293 + RR41_RS02460 0.27 -0.4 502,293 + RR41_RS02460 0.27 +0.3 502,294 - RR41_RS02460 0.28 -0.4 502,377 + RR41_RS02460 0.40 -1.0 502,377 + RR41_RS02460 0.40 -1.5 502,378 - RR41_RS02460 0.40 -2.1 502,378 - RR41_RS02460 0.40 -0.2 502,378 - RR41_RS02460 0.40 -2.7 502,399 - RR41_RS02460 0.43 -2.2 502,399 - RR41_RS02460 0.43 -0.7 502,399 - RR41_RS02460 0.43 -1.5 502,399 - RR41_RS02460 0.43 -0.5 502,536 + RR41_RS02460 0.64 -0.8 502,542 - RR41_RS02460 0.65 -1.8 502,554 + RR41_RS02460 0.67 +1.3 502,575 + RR41_RS02460 0.70 -0.7 502,575 + RR41_RS02460 0.70 -1.7 502,575 + RR41_RS02460 0.70 +1.3 502,575 + RR41_RS02460 0.70 -0.5 502,576 - RR41_RS02460 0.70 -1.3 502,576 - RR41_RS02460 0.70 -2.2 502,576 - RR41_RS02460 0.70 -1.7 502,580 + RR41_RS02460 0.71 -1.5 502,581 - RR41_RS02460 0.71 -0.9 502,581 - RR41_RS02460 0.71 -2.5 502,613 + RR41_RS02460 0.76 -1.7 502,613 + RR41_RS02460 0.76 -1.8 502,627 - RR41_RS02460 0.78 -3.0 502,664 + RR41_RS02460 0.83 -1.7 502,668 - RR41_RS02460 0.84 -3.2 502,705 + RR41_RS02460 0.90 -1.8 502,705 + RR41_RS02460 0.90 -0.8 502,706 - RR41_RS02460 0.90 -1.7 502,706 - RR41_RS02460 0.90 -2.2 502,706 - RR41_RS02460 0.90 -0.9 502,706 - RR41_RS02460 0.90 -1.7 502,707 + -0.4 502,708 - -1.5 502,708 - +1.0 502,708 - -1.2 502,708 - -1.7 502,708 - -2.0 502,734 + -1.0 502,734 + -1.7 502,759 - -0.2 502,769 - -0.6 502,772 - -0.7 502,772 - +0.5 502,819 + -0.3 502,825 + -1.2 502,833 - +1.0 502,877 + -0.8 502,877 + -1.2 502,878 - +1.3 502,899 - +0.6 502,919 + +1.3 502,920 - -0.1 502,934 - -1.0 502,950 + +0.6 502,983 - -0.7 503,370 + RR41_RS02465 0.39 -1.2 503,561 - RR41_RS02465 0.58 -2.4
Or see this region's nucleotide sequence