Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS01635

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS01630 and RR41_RS01635 are separated by 106 nucleotidesRR41_RS01635 and RR41_RS01640 are separated by 40 nucleotidesRR41_RS01640 and RR41_RS01645 are separated by 243 nucleotides RR41_RS01630: RR41_RS01630 - O-antigen ligase family protein, at 347,378 to 348,688 _RS01630 RR41_RS01635: RR41_RS01635 - O-antigen ligase family protein, at 348,795 to 350,423 _RS01635 RR41_RS01640: RR41_RS01640 - bacterioferritin, at 350,464 to 350,928 _RS01640 RR41_RS01645: RR41_RS01645 - bacterioferritin-associated ferredoxin, at 351,172 to 351,366 _RS01645 Position (kb) 348 349 350 351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 347.838 kb on - strand, within RR41_RS01630at 347.843 kb on - strand, within RR41_RS01630at 347.894 kb on + strand, within RR41_RS01630at 347.894 kb on + strand, within RR41_RS01630at 347.895 kb on - strand, within RR41_RS01630at 347.901 kb on - strand, within RR41_RS01630at 347.901 kb on - strand, within RR41_RS01630at 347.965 kb on + strand, within RR41_RS01630at 348.013 kb on - strand, within RR41_RS01630at 348.052 kb on + strand, within RR41_RS01630at 348.052 kb on + strand, within RR41_RS01630at 348.053 kb on - strand, within RR41_RS01630at 348.215 kb on + strand, within RR41_RS01630at 348.216 kb on - strand, within RR41_RS01630at 348.216 kb on - strand, within RR41_RS01630at 348.234 kb on - strand, within RR41_RS01630at 348.252 kb on + strand, within RR41_RS01630at 348.253 kb on - strand, within RR41_RS01630at 348.253 kb on - strand, within RR41_RS01630at 348.257 kb on - strand, within RR41_RS01630at 348.261 kb on + strand, within RR41_RS01630at 348.264 kb on - strand, within RR41_RS01630at 348.294 kb on + strand, within RR41_RS01630at 348.295 kb on - strand, within RR41_RS01630at 348.295 kb on - strand, within RR41_RS01630at 348.307 kb on - strand, within RR41_RS01630at 348.418 kb on + strand, within RR41_RS01630at 348.419 kb on - strand, within RR41_RS01630at 348.453 kb on + strand, within RR41_RS01630at 348.458 kb on - strand, within RR41_RS01630at 348.486 kb on + strand, within RR41_RS01630at 348.494 kb on - strand, within RR41_RS01630at 348.504 kb on - strand, within RR41_RS01630at 348.555 kb on + strand, within RR41_RS01630at 348.556 kb on - strand, within RR41_RS01630at 348.556 kb on - strand, within RR41_RS01630at 348.557 kb on + strand, within RR41_RS01630at 348.558 kb on - strandat 348.558 kb on - strandat 348.558 kb on - strandat 348.567 kb on + strandat 348.576 kb on + strandat 348.611 kb on + strandat 348.612 kb on - strandat 348.663 kb on + strandat 348.664 kb on - strandat 348.664 kb on - strandat 348.664 kb on - strandat 348.664 kb on - strandat 348.664 kb on - strandat 348.699 kb on - strandat 348.723 kb on + strandat 348.723 kb on + strandat 348.723 kb on + strandat 348.724 kb on - strandat 348.724 kb on - strandat 348.724 kb on - strandat 348.724 kb on - strandat 348.724 kb on - strandat 348.731 kb on + strandat 348.755 kb on + strandat 348.756 kb on - strandat 348.774 kb on - strandat 348.861 kb on + strandat 348.914 kb on - strandat 348.914 kb on - strandat 348.914 kb on - strandat 348.922 kb on + strandat 348.923 kb on - strandat 348.923 kb on - strandat 348.967 kb on + strand, within RR41_RS01635at 348.973 kb on + strand, within RR41_RS01635at 349.032 kb on - strand, within RR41_RS01635at 349.046 kb on - strand, within RR41_RS01635at 349.057 kb on - strand, within RR41_RS01635at 349.060 kb on + strand, within RR41_RS01635at 349.060 kb on + strand, within RR41_RS01635at 349.061 kb on - strand, within RR41_RS01635at 349.064 kb on - strand, within RR41_RS01635at 349.076 kb on + strand, within RR41_RS01635at 349.094 kb on + strand, within RR41_RS01635at 349.095 kb on - strand, within RR41_RS01635at 349.095 kb on - strand, within RR41_RS01635at 349.095 kb on - strand, within RR41_RS01635at 349.095 kb on - strand, within RR41_RS01635at 349.105 kb on + strand, within RR41_RS01635at 349.148 kb on - strand, within RR41_RS01635at 349.151 kb on - strand, within RR41_RS01635at 349.151 kb on - strand, within RR41_RS01635at 349.158 kb on - strand, within RR41_RS01635at 349.158 kb on - strand, within RR41_RS01635at 349.162 kb on + strand, within RR41_RS01635at 349.226 kb on + strand, within RR41_RS01635at 349.227 kb on - strand, within RR41_RS01635at 349.227 kb on - strand, within RR41_RS01635at 349.255 kb on - strand, within RR41_RS01635at 349.274 kb on + strand, within RR41_RS01635at 349.274 kb on + strand, within RR41_RS01635at 349.274 kb on + strand, within RR41_RS01635at 349.309 kb on + strand, within RR41_RS01635at 349.309 kb on + strand, within RR41_RS01635at 349.309 kb on + strand, within RR41_RS01635at 349.309 kb on + strand, within RR41_RS01635at 349.318 kb on + strand, within RR41_RS01635at 349.326 kb on + strand, within RR41_RS01635at 349.338 kb on - strand, within RR41_RS01635at 349.444 kb on - strand, within RR41_RS01635at 349.454 kb on + strand, within RR41_RS01635at 349.522 kb on + strand, within RR41_RS01635at 349.547 kb on + strand, within RR41_RS01635at 349.547 kb on + strand, within RR41_RS01635at 349.548 kb on - strand, within RR41_RS01635at 349.550 kb on + strand, within RR41_RS01635at 349.551 kb on - strand, within RR41_RS01635at 349.553 kb on + strand, within RR41_RS01635at 349.553 kb on + strand, within RR41_RS01635at 349.558 kb on + strand, within RR41_RS01635at 349.585 kb on + strand, within RR41_RS01635at 349.586 kb on - strand, within RR41_RS01635at 349.631 kb on - strand, within RR41_RS01635at 349.637 kb on + strand, within RR41_RS01635at 349.728 kb on + strand, within RR41_RS01635at 349.772 kb on + strand, within RR41_RS01635at 349.781 kb on - strand, within RR41_RS01635at 349.814 kb on + strand, within RR41_RS01635at 349.814 kb on + strand, within RR41_RS01635at 349.814 kb on + strand, within RR41_RS01635at 349.814 kb on + strand, within RR41_RS01635at 349.815 kb on - strand, within RR41_RS01635at 349.815 kb on - strand, within RR41_RS01635at 349.815 kb on - strand, within RR41_RS01635at 349.816 kb on + strand, within RR41_RS01635at 349.817 kb on - strand, within RR41_RS01635at 349.823 kb on + strand, within RR41_RS01635at 349.830 kb on + strand, within RR41_RS01635at 349.896 kb on - strand, within RR41_RS01635at 349.896 kb on - strand, within RR41_RS01635at 349.907 kb on + strand, within RR41_RS01635at 349.907 kb on + strand, within RR41_RS01635at 349.908 kb on - strand, within RR41_RS01635at 349.913 kb on - strand, within RR41_RS01635at 349.930 kb on + strand, within RR41_RS01635at 349.953 kb on + strand, within RR41_RS01635at 349.960 kb on + strand, within RR41_RS01635at 349.960 kb on + strand, within RR41_RS01635at 349.961 kb on - strand, within RR41_RS01635at 349.961 kb on - strand, within RR41_RS01635at 349.961 kb on - strand, within RR41_RS01635at 349.964 kb on + strand, within RR41_RS01635at 349.964 kb on + strand, within RR41_RS01635at 349.964 kb on + strand, within RR41_RS01635at 349.965 kb on - strand, within RR41_RS01635at 349.978 kb on + strand, within RR41_RS01635at 349.981 kb on + strand, within RR41_RS01635at 349.987 kb on + strand, within RR41_RS01635at 350.008 kb on + strand, within RR41_RS01635at 350.023 kb on + strand, within RR41_RS01635at 350.023 kb on + strand, within RR41_RS01635at 350.068 kb on + strand, within RR41_RS01635at 350.069 kb on - strand, within RR41_RS01635at 350.072 kb on + strand, within RR41_RS01635at 350.072 kb on + strand, within RR41_RS01635at 350.072 kb on + strand, within RR41_RS01635at 350.072 kb on + strand, within RR41_RS01635at 350.072 kb on + strand, within RR41_RS01635at 350.073 kb on - strand, within RR41_RS01635at 350.073 kb on - strand, within RR41_RS01635at 350.094 kb on + strand, within RR41_RS01635at 350.095 kb on - strand, within RR41_RS01635at 350.096 kb on + strand, within RR41_RS01635at 350.103 kb on + strand, within RR41_RS01635at 350.103 kb on + strand, within RR41_RS01635at 350.104 kb on - strand, within RR41_RS01635at 350.104 kb on - strand, within RR41_RS01635at 350.110 kb on + strand, within RR41_RS01635at 350.114 kb on + strand, within RR41_RS01635at 350.231 kb on + strand, within RR41_RS01635at 350.237 kb on - strand, within RR41_RS01635at 350.237 kb on - strand, within RR41_RS01635at 350.251 kb on + strand, within RR41_RS01635at 350.252 kb on - strand, within RR41_RS01635at 350.279 kb on + strandat 350.280 kb on - strandat 350.292 kb on + strandat 350.295 kb on - strandat 350.303 kb on + strandat 350.307 kb on + strandat 350.317 kb on + strandat 350.317 kb on + strandat 350.317 kb on + strandat 350.318 kb on - strandat 350.325 kb on + strandat 350.326 kb on - strandat 350.327 kb on + strandat 350.338 kb on + strandat 350.338 kb on + strandat 350.338 kb on + strandat 350.339 kb on - strandat 350.359 kb on + strandat 350.364 kb on - strandat 350.393 kb on - strandat 350.439 kb on + strandat 350.439 kb on + strandat 350.509 kb on - strandat 350.524 kb on - strand, within RR41_RS01640at 350.528 kb on - strand, within RR41_RS01640at 350.584 kb on + strand, within RR41_RS01640at 350.584 kb on + strand, within RR41_RS01640at 350.584 kb on + strand, within RR41_RS01640at 350.585 kb on - strand, within RR41_RS01640at 350.588 kb on + strand, within RR41_RS01640at 350.588 kb on + strand, within RR41_RS01640at 350.589 kb on - strand, within RR41_RS01640at 350.589 kb on - strand, within RR41_RS01640at 350.589 kb on - strand, within RR41_RS01640at 350.695 kb on - strand, within RR41_RS01640at 350.707 kb on + strand, within RR41_RS01640at 350.741 kb on - strand, within RR41_RS01640at 350.745 kb on + strand, within RR41_RS01640at 350.745 kb on + strand, within RR41_RS01640at 350.746 kb on - strand, within RR41_RS01640at 350.755 kb on - strand, within RR41_RS01640at 350.794 kb on - strand, within RR41_RS01640at 350.839 kb on - strand, within RR41_RS01640at 350.848 kb on + strand, within RR41_RS01640at 350.862 kb on + strand, within RR41_RS01640at 350.862 kb on + strand, within RR41_RS01640at 350.882 kb on + strandat 350.931 kb on + strandat 350.931 kb on + strandat 350.931 kb on + strandat 350.931 kb on + strandat 350.932 kb on - strandat 350.935 kb on + strandat 350.976 kb on + strandat 350.978 kb on + strandat 351.068 kb on - strandat 351.114 kb on - strandat 351.222 kb on + strand, within RR41_RS01645at 351.225 kb on + strand, within RR41_RS01645at 351.225 kb on + strand, within RR41_RS01645at 351.262 kb on - strand, within RR41_RS01645at 351.362 kb on + strandat 351.363 kb on - strandat 351.383 kb on + strandat 351.383 kb on + strandat 351.385 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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347,838 - RR41_RS01630 0.35 -2.2
347,843 - RR41_RS01630 0.35 -0.4
347,894 + RR41_RS01630 0.39 +1.6
347,894 + RR41_RS01630 0.39 +0.6
347,895 - RR41_RS01630 0.39 -0.5
347,901 - RR41_RS01630 0.40 +0.1
347,901 - RR41_RS01630 0.40 -0.3
347,965 + RR41_RS01630 0.45 -1.1
348,013 - RR41_RS01630 0.48 -1.1
348,052 + RR41_RS01630 0.51 +1.4
348,052 + RR41_RS01630 0.51 -0.9
348,053 - RR41_RS01630 0.51 +3.2
348,215 + RR41_RS01630 0.64 -2.1
348,216 - RR41_RS01630 0.64 +0.1
348,216 - RR41_RS01630 0.64 -1.1
348,234 - RR41_RS01630 0.65 -1.6
348,252 + RR41_RS01630 0.67 -0.1
348,253 - RR41_RS01630 0.67 -1.3
348,253 - RR41_RS01630 0.67 +0.6
348,257 - RR41_RS01630 0.67 +1.0
348,261 + RR41_RS01630 0.67 +1.2
348,264 - RR41_RS01630 0.68 -2.4
348,294 + RR41_RS01630 0.70 -2.4
348,295 - RR41_RS01630 0.70 -0.9
348,295 - RR41_RS01630 0.70 +0.8
348,307 - RR41_RS01630 0.71 +8.2
348,418 + RR41_RS01630 0.79 +1.8
348,419 - RR41_RS01630 0.79 -1.4
348,453 + RR41_RS01630 0.82 +1.2
348,458 - RR41_RS01630 0.82 +1.2
348,486 + RR41_RS01630 0.85 -0.1
348,494 - RR41_RS01630 0.85 -1.1
348,504 - RR41_RS01630 0.86 +1.1
348,555 + RR41_RS01630 0.90 -0.9
348,556 - RR41_RS01630 0.90 -1.9
348,556 - RR41_RS01630 0.90 -2.1
348,557 + RR41_RS01630 0.90 -0.9
348,558 - -0.6
348,558 - -1.6
348,558 - -1.9
348,567 + -0.8
348,576 + -0.8
348,611 + -0.9
348,612 - -0.6
348,663 + +0.1
348,664 - -1.6
348,664 - +0.5
348,664 - -1.6
348,664 - +0.2
348,664 - -1.7
348,699 - -1.8
348,723 + -1.4
348,723 + -0.8
348,723 + +0.2
348,724 - -1.1
348,724 - +0.1
348,724 - -1.9
348,724 - -1.8
348,724 - -0.5
348,731 + +1.4
348,755 + -0.6
348,756 - +0.1
348,774 - +0.4
348,861 + +0.2
348,914 - -0.3
348,914 - -1.6
348,914 - -2.4
348,922 + -0.5
348,923 - -0.9
348,923 - -1.9
348,967 + RR41_RS01635 0.11 -1.7
348,973 + RR41_RS01635 0.11 -0.8
349,032 - RR41_RS01635 0.15 -1.9
349,046 - RR41_RS01635 0.15 -1.1
349,057 - RR41_RS01635 0.16 +0.2
349,060 + RR41_RS01635 0.16 -1.8
349,060 + RR41_RS01635 0.16 -2.1
349,061 - RR41_RS01635 0.16 -1.8
349,064 - RR41_RS01635 0.17 -1.6
349,076 + RR41_RS01635 0.17 -0.9
349,094 + RR41_RS01635 0.18 -0.4
349,095 - RR41_RS01635 0.18 -0.4
349,095 - RR41_RS01635 0.18 -2.5
349,095 - RR41_RS01635 0.18 -1.4
349,095 - RR41_RS01635 0.18 -0.2
349,105 + RR41_RS01635 0.19 +0.5
349,148 - RR41_RS01635 0.22 -2.8
349,151 - RR41_RS01635 0.22 -1.6
349,151 - RR41_RS01635 0.22 +0.2
349,158 - RR41_RS01635 0.22 -1.8
349,158 - RR41_RS01635 0.22 -1.4
349,162 + RR41_RS01635 0.23 -1.4
349,226 + RR41_RS01635 0.26 +0.6
349,227 - RR41_RS01635 0.27 -0.8
349,227 - RR41_RS01635 0.27 -0.4
349,255 - RR41_RS01635 0.28 +0.0
349,274 + RR41_RS01635 0.29 -3.0
349,274 + RR41_RS01635 0.29 -0.2
349,274 + RR41_RS01635 0.29 +1.2
349,309 + RR41_RS01635 0.32 -1.9
349,309 + RR41_RS01635 0.32 -2.5
349,309 + RR41_RS01635 0.32 -1.9
349,309 + RR41_RS01635 0.32 -0.9
349,318 + RR41_RS01635 0.32 -0.8
349,326 + RR41_RS01635 0.33 -2.1
349,338 - RR41_RS01635 0.33 -1.1
349,444 - RR41_RS01635 0.40 -3.1
349,454 + RR41_RS01635 0.40 -0.2
349,522 + RR41_RS01635 0.45 -1.9
349,547 + RR41_RS01635 0.46 -0.5
349,547 + RR41_RS01635 0.46 -0.6
349,548 - RR41_RS01635 0.46 -0.8
349,550 + RR41_RS01635 0.46 -1.8
349,551 - RR41_RS01635 0.46 +0.1
349,553 + RR41_RS01635 0.47 +0.6
349,553 + RR41_RS01635 0.47 -1.8
349,558 + RR41_RS01635 0.47 -3.4
349,585 + RR41_RS01635 0.48 -0.8
349,586 - RR41_RS01635 0.49 +1.0
349,631 - RR41_RS01635 0.51 -0.4
349,637 + RR41_RS01635 0.52 -3.8
349,728 + RR41_RS01635 0.57 +1.2
349,772 + RR41_RS01635 0.60 -0.6
349,781 - RR41_RS01635 0.61 +1.8
349,814 + RR41_RS01635 0.63 -1.4
349,814 + RR41_RS01635 0.63 -1.7
349,814 + RR41_RS01635 0.63 -1.4
349,814 + RR41_RS01635 0.63 -0.9
349,815 - RR41_RS01635 0.63 -2.4
349,815 - RR41_RS01635 0.63 -1.4
349,815 - RR41_RS01635 0.63 -0.4
349,816 + RR41_RS01635 0.63 -0.8
349,817 - RR41_RS01635 0.63 -3.7
349,823 + RR41_RS01635 0.63 +0.2
349,830 + RR41_RS01635 0.64 -0.1
349,896 - RR41_RS01635 0.68 -0.8
349,896 - RR41_RS01635 0.68 -0.9
349,907 + RR41_RS01635 0.68 -1.4
349,907 + RR41_RS01635 0.68 -1.6
349,908 - RR41_RS01635 0.68 -2.6
349,913 - RR41_RS01635 0.69 -2.4
349,930 + RR41_RS01635 0.70 -1.1
349,953 + RR41_RS01635 0.71 +1.2
349,960 + RR41_RS01635 0.72 -2.5
349,960 + RR41_RS01635 0.72 +0.2
349,961 - RR41_RS01635 0.72 +1.2
349,961 - RR41_RS01635 0.72 -1.6
349,961 - RR41_RS01635 0.72 +1.2
349,964 + RR41_RS01635 0.72 -0.9
349,964 + RR41_RS01635 0.72 -2.4
349,964 + RR41_RS01635 0.72 -0.4
349,965 - RR41_RS01635 0.72 +0.2
349,978 + RR41_RS01635 0.73 -1.2
349,981 + RR41_RS01635 0.73 -1.4
349,987 + RR41_RS01635 0.73 -1.4
350,008 + RR41_RS01635 0.74 -1.4
350,023 + RR41_RS01635 0.75 -0.4
350,023 + RR41_RS01635 0.75 +0.2
350,068 + RR41_RS01635 0.78 -1.8
350,069 - RR41_RS01635 0.78 -1.4
350,072 + RR41_RS01635 0.78 -0.6
350,072 + RR41_RS01635 0.78 -1.4
350,072 + RR41_RS01635 0.78 -1.3
350,072 + RR41_RS01635 0.78 -1.8
350,072 + RR41_RS01635 0.78 -1.2
350,073 - RR41_RS01635 0.78 -2.2
350,073 - RR41_RS01635 0.78 -0.4
350,094 + RR41_RS01635 0.80 -1.4
350,095 - RR41_RS01635 0.80 -2.9
350,096 + RR41_RS01635 0.80 -1.4
350,103 + RR41_RS01635 0.80 -0.1
350,103 + RR41_RS01635 0.80 -0.9
350,104 - RR41_RS01635 0.80 -2.0
350,104 - RR41_RS01635 0.80 -1.4
350,110 + RR41_RS01635 0.81 -1.6
350,114 + RR41_RS01635 0.81 +1.0
350,231 + RR41_RS01635 0.88 -1.6
350,237 - RR41_RS01635 0.89 -0.3
350,237 - RR41_RS01635 0.89 -0.8
350,251 + RR41_RS01635 0.89 -2.6
350,252 - RR41_RS01635 0.89 -3.1
350,279 + -2.7
350,280 - -0.3
350,292 + -1.2
350,295 - -0.1
350,303 + -0.8
350,307 + -3.1
350,317 + -1.3
350,317 + -1.1
350,317 + -0.2
350,318 - -0.1
350,325 + -2.8
350,326 - -1.3
350,327 + -1.5
350,338 + -2.8
350,338 + -2.9
350,338 + -2.3
350,339 - -2.1
350,359 + -0.3
350,364 - -1.3
350,393 - -0.3
350,439 + -0.2
350,439 + +0.5
350,509 - +1.7
350,524 - RR41_RS01640 0.13 -1.1
350,528 - RR41_RS01640 0.14 -1.3
350,584 + RR41_RS01640 0.26 -0.8
350,584 + RR41_RS01640 0.26 +2.2
350,584 + RR41_RS01640 0.26 -0.8
350,585 - RR41_RS01640 0.26 -1.9
350,588 + RR41_RS01640 0.27 -1.3
350,588 + RR41_RS01640 0.27 -2.2
350,589 - RR41_RS01640 0.27 -1.5
350,589 - RR41_RS01640 0.27 -0.2
350,589 - RR41_RS01640 0.27 -0.8
350,695 - RR41_RS01640 0.50 +0.5
350,707 + RR41_RS01640 0.52 -1.1
350,741 - RR41_RS01640 0.60 -1.3
350,745 + RR41_RS01640 0.60 +2.2
350,745 + RR41_RS01640 0.60 -0.5
350,746 - RR41_RS01640 0.61 -0.3
350,755 - RR41_RS01640 0.63 -0.8
350,794 - RR41_RS01640 0.71 -0.8
350,839 - RR41_RS01640 0.81 -2.3
350,848 + RR41_RS01640 0.83 -1.1
350,862 + RR41_RS01640 0.86 -2.3
350,862 + RR41_RS01640 0.86 -0.8
350,882 + -1.8
350,931 + -0.6
350,931 + -2.5
350,931 + -1.3
350,931 + -0.3
350,932 - -0.6
350,935 + +1.2
350,976 + -1.3
350,978 + +1.5
351,068 - +0.1
351,114 - -2.7
351,222 + RR41_RS01645 0.26 -2.1
351,225 + RR41_RS01645 0.27 +0.9
351,225 + RR41_RS01645 0.27 +0.8
351,262 - RR41_RS01645 0.46 -1.8
351,362 + +1.8
351,363 - +0.8
351,383 + +2.2
351,383 + +0.6
351,385 + +0.0

Or see this region's nucleotide sequence