Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS01510

Experiment: MHII_biocarbonate_serum_Chelated; 35C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS01505 and RR41_RS01510 are separated by 222 nucleotidesRR41_RS01510 and RR41_RS01515 overlap by 1 nucleotidesRR41_RS01515 and RR41_RS01520 are separated by 11 nucleotides RR41_RS01505: RR41_RS01505 - sulfate ABC transporter substrate-binding protein, at 316,557 to 317,558 _RS01505 RR41_RS01510: RR41_RS01510 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 317,781 to 318,704 _RS01510 RR41_RS01515: RR41_RS01515 - cell division protein FtsL, at 318,704 to 319,036 _RS01515 RR41_RS01520: RR41_RS01520 - penicillin-binding protein PBP3, at 319,048 to 320,880 _RS01520 Position (kb) 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 316.883 kb on + strand, within RR41_RS01505at 316.883 kb on + strand, within RR41_RS01505at 316.896 kb on + strand, within RR41_RS01505at 316.896 kb on + strand, within RR41_RS01505at 316.896 kb on + strand, within RR41_RS01505at 316.897 kb on - strand, within RR41_RS01505at 316.899 kb on - strand, within RR41_RS01505at 316.904 kb on + strand, within RR41_RS01505at 316.918 kb on + strand, within RR41_RS01505at 316.919 kb on - strand, within RR41_RS01505at 316.964 kb on - strand, within RR41_RS01505at 316.968 kb on - strand, within RR41_RS01505at 316.968 kb on - strand, within RR41_RS01505at 316.989 kb on - strand, within RR41_RS01505at 317.029 kb on - strand, within RR41_RS01505at 317.029 kb on - strand, within RR41_RS01505at 317.029 kb on - strand, within RR41_RS01505at 317.029 kb on - strand, within RR41_RS01505at 317.046 kb on + strand, within RR41_RS01505at 317.046 kb on + strand, within RR41_RS01505at 317.047 kb on - strand, within RR41_RS01505at 317.047 kb on - strand, within RR41_RS01505at 317.047 kb on - strand, within RR41_RS01505at 317.078 kb on + strand, within RR41_RS01505at 317.079 kb on - strand, within RR41_RS01505at 317.079 kb on - strand, within RR41_RS01505at 317.150 kb on + strand, within RR41_RS01505at 317.150 kb on + strand, within RR41_RS01505at 317.150 kb on + strand, within RR41_RS01505at 317.153 kb on + strand, within RR41_RS01505at 317.153 kb on + strand, within RR41_RS01505at 317.153 kb on + strand, within RR41_RS01505at 317.154 kb on - strand, within RR41_RS01505at 317.154 kb on - strand, within RR41_RS01505at 317.154 kb on - strand, within RR41_RS01505at 317.154 kb on - strand, within RR41_RS01505at 317.154 kb on - strand, within RR41_RS01505at 317.185 kb on + strand, within RR41_RS01505at 317.185 kb on + strand, within RR41_RS01505at 317.185 kb on + strand, within RR41_RS01505at 317.209 kb on + strand, within RR41_RS01505at 317.210 kb on - strand, within RR41_RS01505at 317.237 kb on + strand, within RR41_RS01505at 317.237 kb on + strand, within RR41_RS01505at 317.237 kb on + strand, within RR41_RS01505at 317.238 kb on - strand, within RR41_RS01505at 317.238 kb on - strand, within RR41_RS01505at 317.241 kb on + strand, within RR41_RS01505at 317.241 kb on + strand, within RR41_RS01505at 317.356 kb on + strand, within RR41_RS01505at 317.368 kb on + strand, within RR41_RS01505at 317.395 kb on - strand, within RR41_RS01505at 317.430 kb on + strand, within RR41_RS01505at 317.431 kb on - strand, within RR41_RS01505at 317.431 kb on - strand, within RR41_RS01505at 317.431 kb on - strand, within RR41_RS01505at 317.459 kb on - strandat 317.541 kb on + strandat 317.541 kb on + strandat 317.541 kb on + strandat 317.542 kb on - strandat 317.542 kb on - strandat 317.577 kb on - strandat 317.604 kb on + strandat 317.607 kb on - strandat 317.697 kb on - strandat 317.761 kb on + strandat 317.850 kb on + strandat 317.923 kb on + strand, within RR41_RS01510at 317.925 kb on + strand, within RR41_RS01510at 318.079 kb on + strand, within RR41_RS01510at 318.079 kb on + strand, within RR41_RS01510at 318.193 kb on + strand, within RR41_RS01510at 318.419 kb on + strand, within RR41_RS01510at 318.541 kb on + strand, within RR41_RS01510

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_serum_Chelated; 35C
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316,883 + RR41_RS01505 0.33 -0.6
316,883 + RR41_RS01505 0.33 -2.0
316,896 + RR41_RS01505 0.34 -2.4
316,896 + RR41_RS01505 0.34 -0.4
316,896 + RR41_RS01505 0.34 -1.4
316,897 - RR41_RS01505 0.34 -0.8
316,899 - RR41_RS01505 0.34 -0.8
316,904 + RR41_RS01505 0.35 -0.4
316,918 + RR41_RS01505 0.36 +0.5
316,919 - RR41_RS01505 0.36 -0.6
316,964 - RR41_RS01505 0.41 -0.1
316,968 - RR41_RS01505 0.41 +0.4
316,968 - RR41_RS01505 0.41 -1.8
316,989 - RR41_RS01505 0.43 +0.6
317,029 - RR41_RS01505 0.47 +0.1
317,029 - RR41_RS01505 0.47 +0.1
317,029 - RR41_RS01505 0.47 +0.5
317,029 - RR41_RS01505 0.47 +1.2
317,046 + RR41_RS01505 0.49 -1.2
317,046 + RR41_RS01505 0.49 -1.1
317,047 - RR41_RS01505 0.49 -2.0
317,047 - RR41_RS01505 0.49 -0.4
317,047 - RR41_RS01505 0.49 -0.0
317,078 + RR41_RS01505 0.52 -1.0
317,079 - RR41_RS01505 0.52 -0.4
317,079 - RR41_RS01505 0.52 -0.4
317,150 + RR41_RS01505 0.59 -0.3
317,150 + RR41_RS01505 0.59 -0.4
317,150 + RR41_RS01505 0.59 -1.0
317,153 + RR41_RS01505 0.59 -1.5
317,153 + RR41_RS01505 0.59 -0.6
317,153 + RR41_RS01505 0.59 -0.8
317,154 - RR41_RS01505 0.60 -3.4
317,154 - RR41_RS01505 0.60 -0.4
317,154 - RR41_RS01505 0.60 +0.6
317,154 - RR41_RS01505 0.60 +0.1
317,154 - RR41_RS01505 0.60 +1.9
317,185 + RR41_RS01505 0.63 -2.1
317,185 + RR41_RS01505 0.63 +0.5
317,185 + RR41_RS01505 0.63 -0.8
317,209 + RR41_RS01505 0.65 +0.7
317,210 - RR41_RS01505 0.65 -1.5
317,237 + RR41_RS01505 0.68 -0.0
317,237 + RR41_RS01505 0.68 +0.6
317,237 + RR41_RS01505 0.68 -1.9
317,238 - RR41_RS01505 0.68 +0.6
317,238 - RR41_RS01505 0.68 -0.6
317,241 + RR41_RS01505 0.68 +0.4
317,241 + RR41_RS01505 0.68 -1.3
317,356 + RR41_RS01505 0.80 +0.7
317,368 + RR41_RS01505 0.81 -0.1
317,395 - RR41_RS01505 0.84 +0.8
317,430 + RR41_RS01505 0.87 -0.4
317,431 - RR41_RS01505 0.87 +0.7
317,431 - RR41_RS01505 0.87 -1.1
317,431 - RR41_RS01505 0.87 -1.1
317,459 - +0.2
317,541 + -2.4
317,541 + -0.8
317,541 + -1.3
317,542 - +0.4
317,542 - -1.1
317,577 - +1.8
317,604 + +0.4
317,607 - +0.2
317,697 - -0.6
317,761 + +0.0
317,850 + +0.6
317,923 + RR41_RS01510 0.15 -2.1
317,925 + RR41_RS01510 0.16 -1.4
318,079 + RR41_RS01510 0.32 +1.2
318,079 + RR41_RS01510 0.32 +1.2
318,193 + RR41_RS01510 0.45 +0.2
318,419 + RR41_RS01510 0.69 -1.4
318,541 + RR41_RS01510 0.82 +1.2

Or see this region's nucleotide sequence