Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06851 and MPMX19_06852 are separated by 10 nucleotides MPMX19_06852 and MPMX19_06853 are separated by 57 nucleotides
MPMX19_06851: MPMX19_06851 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 119,424 to 120,896
_06851
MPMX19_06852: MPMX19_06852 - hypothetical protein, at 120,907 to 121,278
_06852
MPMX19_06853: MPMX19_06853 - Glyoxylate/hydroxypyruvate reductase A, at 121,336 to 122,259
_06853
Position (kb)
120
121
122 Strain fitness (log2 ratio)
-2
-1
0
1 at 120.769 kb on + strand at 120.769 kb on + strand at 120.769 kb on + strand at 120.770 kb on - strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.923 kb on + strand at 120.924 kb on - strand at 120.924 kb on - strand at 120.924 kb on - strand at 120.924 kb on - strand at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 122.135 kb on + strand, within MPMX19_06853
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 120,769 + +1.0 120,769 + +0.7 120,769 + -1.2 120,770 - -1.3 120,923 + -1.3 120,923 + -1.6 120,923 + -1.3 120,923 + +0.2 120,923 + -0.3 120,923 + +0.5 120,924 - -0.5 120,924 - +0.0 120,924 - -0.3 120,924 - -0.2 121,440 + MPMX19_06853 0.11 +1.3 121,440 + MPMX19_06853 0.11 +1.2 121,440 + MPMX19_06853 0.11 -0.8 121,440 + MPMX19_06853 0.11 -0.3 121,440 + MPMX19_06853 0.11 +1.3 121,441 - MPMX19_06853 0.11 -2.3 121,441 - MPMX19_06853 0.11 +0.1 121,970 + MPMX19_06853 0.69 -1.2 121,970 + MPMX19_06853 0.69 +0.2 121,971 - MPMX19_06853 0.69 -1.1 121,971 - MPMX19_06853 0.69 +1.4 121,971 - MPMX19_06853 0.69 -0.8 122,135 + MPMX19_06853 0.86 +0.4
Or see this region's nucleotide sequence