Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06788

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06787 and MPMX19_06788 are separated by 108 nucleotidesMPMX19_06788 and MPMX19_06789 are separated by 40 nucleotidesMPMX19_06789 and MPMX19_06790 are separated by 53 nucleotides MPMX19_06787: MPMX19_06787 - Fosfomycin resistance protein AbaF, at 51,813 to 53,213 _06787 MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305 _06788 MPMX19_06789: MPMX19_06789 - Octopine catabolism/uptake operon regulatory protein OccR, at 54,346 to 55,242 _06789 MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621 _06790 Position (kb) 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1at 52.635 kb on + strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.636 kb on - strand, within MPMX19_06787at 52.640 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.641 kb on + strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.642 kb on - strand, within MPMX19_06787at 52.662 kb on + strand, within MPMX19_06787at 52.662 kb on + strand, within MPMX19_06787at 52.662 kb on + strand, within MPMX19_06787at 52.663 kb on - strand, within MPMX19_06787at 52.663 kb on - strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.893 kb on + strand, within MPMX19_06787at 52.894 kb on - strand, within MPMX19_06787at 52.894 kb on - strand, within MPMX19_06787at 52.894 kb on - strand, within MPMX19_06787at 53.055 kb on + strand, within MPMX19_06787at 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.085 kb on + strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.086 kb on - strandat 53.124 kb on + strandat 53.124 kb on + strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.125 kb on - strandat 53.340 kb on + strandat 53.340 kb on + strandat 53.341 kb on - strandat 53.341 kb on - strandat 54.066 kb on + strand, within MPMX19_06788at 54.067 kb on - strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.178 kb on - strand, within MPMX19_06788at 54.280 kb on + strandat 54.310 kb on + strandat 54.311 kb on - strandat 54.311 kb on - strandat 54.311 kb on - strandat 54.312 kb on + strandat 54.312 kb on + strandat 54.312 kb on + strandat 54.313 kb on - strandat 54.313 kb on - strandat 54.988 kb on + strand, within MPMX19_06789at 54.988 kb on + strand, within MPMX19_06789at 54.988 kb on + strand, within MPMX19_06789at 54.989 kb on - strand, within MPMX19_06789at 54.989 kb on - strand, within MPMX19_06789

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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52,635 + MPMX19_06787 0.59 +0.2
52,636 - MPMX19_06787 0.59 +0.0
52,636 - MPMX19_06787 0.59 +1.0
52,636 - MPMX19_06787 0.59 +0.4
52,636 - MPMX19_06787 0.59 -0.3
52,636 - MPMX19_06787 0.59 -0.4
52,640 + MPMX19_06787 0.59 +1.7
52,641 + MPMX19_06787 0.59 -1.2
52,641 + MPMX19_06787 0.59 -1.7
52,641 + MPMX19_06787 0.59 -0.8
52,641 + MPMX19_06787 0.59 +0.4
52,642 - MPMX19_06787 0.59 +0.7
52,642 - MPMX19_06787 0.59 -0.8
52,642 - MPMX19_06787 0.59 +0.0
52,642 - MPMX19_06787 0.59 +0.3
52,662 + MPMX19_06787 0.61 -0.3
52,662 + MPMX19_06787 0.61 -1.6
52,662 + MPMX19_06787 0.61 -1.7
52,663 - MPMX19_06787 0.61 +0.2
52,663 - MPMX19_06787 0.61 +0.4
52,893 + MPMX19_06787 0.77 -1.8
52,893 + MPMX19_06787 0.77 -2.3
52,893 + MPMX19_06787 0.77 -0.7
52,893 + MPMX19_06787 0.77 -0.8
52,893 + MPMX19_06787 0.77 +0.2
52,893 + MPMX19_06787 0.77 -0.8
52,893 + MPMX19_06787 0.77 +0.2
52,893 + MPMX19_06787 0.77 -0.6
52,893 + MPMX19_06787 0.77 +0.7
52,894 - MPMX19_06787 0.77 +0.5
52,894 - MPMX19_06787 0.77 -0.4
52,894 - MPMX19_06787 0.77 +1.0
53,055 + MPMX19_06787 0.89 -0.1
53,085 + -1.0
53,085 + -0.4
53,085 + -0.2
53,085 + -0.5
53,085 + +0.7
53,085 + +1.0
53,085 + +0.1
53,085 + -0.1
53,085 + -0.4
53,085 + -0.3
53,086 - +1.4
53,086 - -0.5
53,086 - -0.4
53,086 - -2.0
53,086 - -0.6
53,086 - +1.5
53,086 - +0.0
53,086 - -0.8
53,086 - -1.0
53,124 + +0.7
53,124 + -0.2
53,125 - -0.3
53,125 - -1.1
53,125 - -1.0
53,125 - -0.5
53,125 - +0.2
53,125 - -0.7
53,125 - -2.0
53,340 + -0.4
53,340 + -2.8
53,341 - -1.5
53,341 - -0.5
54,066 + MPMX19_06788 0.76 +0.4
54,067 - MPMX19_06788 0.76 -1.1
54,177 + MPMX19_06788 0.87 -0.8
54,177 + MPMX19_06788 0.87 -0.3
54,177 + MPMX19_06788 0.87 -1.1
54,177 + MPMX19_06788 0.87 -1.7
54,177 + MPMX19_06788 0.87 -1.1
54,178 - MPMX19_06788 0.87 -2.1
54,280 + +0.6
54,310 + -1.8
54,311 - -2.3
54,311 - +0.3
54,311 - -0.4
54,312 + -0.3
54,312 + +1.0
54,312 + -1.3
54,313 - -0.0
54,313 - -0.6
54,988 + MPMX19_06789 0.72 -0.1
54,988 + MPMX19_06789 0.72 -1.4
54,988 + MPMX19_06789 0.72 -1.3
54,989 - MPMX19_06789 0.72 -0.9
54,989 - MPMX19_06789 0.72 -1.2

Or see this region's nucleotide sequence