Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06431 and MPMX19_06432 are separated by 98 nucleotides MPMX19_06432 and MPMX19_06433 are separated by 229 nucleotides MPMX19_06433 and MPMX19_06434 are separated by 69 nucleotides
MPMX19_06431: MPMX19_06431 - hypothetical protein, at 204,387 to 204,713
_06431
MPMX19_06432: MPMX19_06432 - Copper chaperone CopZ, at 204,812 to 205,012
_06432
MPMX19_06433: MPMX19_06433 - Tn3 family transposase ISAzs17, at 205,242 to 205,946
_06433
MPMX19_06434: MPMX19_06434 - Tyrosine recombinase XerD, at 206,016 to 207,152
_06434
Position (kb) 205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.388 kb on + strand at 204.388 kb on + strand at 204.388 kb on + strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.389 kb on - strand at 204.738 kb on + strand at 204.738 kb on + strand at 204.738 kb on + strand at 204.739 kb on - strand at 204.739 kb on - strand at 204.739 kb on - strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.740 kb on + strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 204.741 kb on - strand at 205.056 kb on - strand at 205.056 kb on - strand at 205.056 kb on - strand at 205.056 kb on - strand at 205.072 kb on + strand at 205.073 kb on - strand at 205.073 kb on - strand at 205.106 kb on + strand at 205.106 kb on + strand at 205.106 kb on + strand at 205.106 kb on + strand at 205.107 kb on - strand at 205.107 kb on - strand at 205.144 kb on - strand at 205.152 kb on + strand at 205.194 kb on + strand at 205.194 kb on + strand at 205.194 kb on + strand at 205.195 kb on - strand at 205.195 kb on - strand at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.318 kb on + strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.319 kb on - strand, within MPMX19_06433 at 205.337 kb on + strand, within MPMX19_06433 at 205.383 kb on + strand, within MPMX19_06433 at 205.383 kb on + strand, within MPMX19_06433 at 205.383 kb on + strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.384 kb on - strand, within MPMX19_06433 at 205.429 kb on + strand, within MPMX19_06433 at 205.429 kb on + strand, within MPMX19_06433 at 205.429 kb on + strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.430 kb on - strand, within MPMX19_06433 at 205.451 kb on + strand, within MPMX19_06433 at 205.452 kb on - strand, within MPMX19_06433 at 205.452 kb on - strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.626 kb on + strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.627 kb on - strand, within MPMX19_06433 at 205.861 kb on + strand, within MPMX19_06433 at 205.862 kb on - strand, within MPMX19_06433 at 205.889 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.923 kb on + strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.924 kb on - strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.947 kb on + strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.948 kb on - strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.949 kb on + strand at 205.950 kb on - strand at 205.950 kb on - strand at 205.950 kb on - strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.015 kb on + strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.016 kb on - strand at 206.154 kb on + strand, within MPMX19_06434 at 206.155 kb on - strand, within MPMX19_06434 at 206.346 kb on - strand, within MPMX19_06434 at 206.379 kb on + strand, within MPMX19_06434 at 206.380 kb on - strand, within MPMX19_06434 at 206.380 kb on - strand, within MPMX19_06434 at 206.688 kb on + strand, within MPMX19_06434 at 206.689 kb on - strand, within MPMX19_06434 at 206.689 kb on - strand, within MPMX19_06434 at 206.710 kb on + strand, within MPMX19_06434 at 206.710 kb on + strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.711 kb on - strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.811 kb on + strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.812 kb on - strand, within MPMX19_06434 at 206.850 kb on + strand, within MPMX19_06434 at 206.860 kb on + strand, within MPMX19_06434 at 206.860 kb on + strand, within MPMX19_06434 at 206.861 kb on - strand, within MPMX19_06434 at 206.901 kb on + strand, within MPMX19_06434 at 206.902 kb on - strand, within MPMX19_06434
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 204,388 + -0.6 204,388 + -0.6 204,388 + -1.9 204,389 - +2.1 204,389 - -1.0 204,389 - -0.6 204,389 - -0.2 204,389 - -0.5 204,389 - +1.0 204,389 - +1.3 204,738 + -0.6 204,738 + +0.0 204,738 + -0.6 204,739 - -0.4 204,739 - -1.1 204,739 - -0.0 204,740 + -1.5 204,740 + -1.6 204,740 + -0.6 204,740 + +0.8 204,740 + +0.7 204,740 + -0.7 204,740 + +0.3 204,740 + -1.3 204,740 + -0.5 204,740 + -0.1 204,740 + -0.5 204,741 - +0.4 204,741 - -0.7 204,741 - +1.6 204,741 - -1.0 204,741 - -0.7 204,741 - -0.4 204,741 - +1.6 204,741 - -1.2 204,741 - +0.2 204,741 - +1.3 204,741 - +1.2 204,741 - -0.3 205,056 - -0.7 205,056 - -0.1 205,056 - -1.0 205,056 - +0.7 205,072 + -0.9 205,073 - -1.0 205,073 - +0.7 205,106 + +0.1 205,106 + +0.8 205,106 + -1.4 205,106 + +0.7 205,107 - -0.5 205,107 - -0.9 205,144 - -2.0 205,152 + -0.3 205,194 + -0.2 205,194 + +0.1 205,194 + -0.9 205,195 - +0.5 205,195 - -0.6 205,318 + MPMX19_06433 0.11 -0.2 205,318 + MPMX19_06433 0.11 -1.0 205,318 + MPMX19_06433 0.11 +0.0 205,318 + MPMX19_06433 0.11 -0.7 205,318 + MPMX19_06433 0.11 -0.0 205,318 + MPMX19_06433 0.11 +1.3 205,318 + MPMX19_06433 0.11 -0.9 205,318 + MPMX19_06433 0.11 -0.3 205,318 + MPMX19_06433 0.11 +0.3 205,318 + MPMX19_06433 0.11 -0.3 205,318 + MPMX19_06433 0.11 -0.4 205,318 + MPMX19_06433 0.11 -0.6 205,318 + MPMX19_06433 0.11 -0.2 205,318 + MPMX19_06433 0.11 +0.1 205,318 + MPMX19_06433 0.11 -0.4 205,319 - MPMX19_06433 0.11 -0.7 205,319 - MPMX19_06433 0.11 +0.8 205,319 - MPMX19_06433 0.11 -1.0 205,319 - MPMX19_06433 0.11 -2.1 205,319 - MPMX19_06433 0.11 -0.0 205,319 - MPMX19_06433 0.11 -0.0 205,319 - MPMX19_06433 0.11 -1.6 205,319 - MPMX19_06433 0.11 -0.7 205,319 - MPMX19_06433 0.11 -1.0 205,319 - MPMX19_06433 0.11 -1.3 205,319 - MPMX19_06433 0.11 -0.5 205,319 - MPMX19_06433 0.11 -0.6 205,319 - MPMX19_06433 0.11 -0.5 205,319 - MPMX19_06433 0.11 -2.2 205,337 + MPMX19_06433 0.13 +0.5 205,383 + MPMX19_06433 0.20 +1.8 205,383 + MPMX19_06433 0.20 +1.2 205,383 + MPMX19_06433 0.20 -0.5 205,384 - MPMX19_06433 0.20 -0.5 205,384 - MPMX19_06433 0.20 -1.5 205,384 - MPMX19_06433 0.20 -1.3 205,384 - MPMX19_06433 0.20 +0.8 205,429 + MPMX19_06433 0.27 -1.2 205,429 + MPMX19_06433 0.27 +2.4 205,429 + MPMX19_06433 0.27 -0.8 205,430 - MPMX19_06433 0.27 -1.3 205,430 - MPMX19_06433 0.27 -2.0 205,430 - MPMX19_06433 0.27 +1.4 205,430 - MPMX19_06433 0.27 -1.9 205,451 + MPMX19_06433 0.30 -0.5 205,452 - MPMX19_06433 0.30 -1.6 205,452 - MPMX19_06433 0.30 -1.2 205,626 + MPMX19_06433 0.54 +0.4 205,626 + MPMX19_06433 0.54 -0.7 205,626 + MPMX19_06433 0.54 -1.0 205,626 + MPMX19_06433 0.54 +0.5 205,626 + MPMX19_06433 0.54 -0.6 205,627 - MPMX19_06433 0.55 +0.5 205,627 - MPMX19_06433 0.55 -0.9 205,627 - MPMX19_06433 0.55 -0.9 205,627 - MPMX19_06433 0.55 +0.1 205,627 - MPMX19_06433 0.55 -1.3 205,627 - MPMX19_06433 0.55 -1.1 205,627 - MPMX19_06433 0.55 -0.7 205,861 + MPMX19_06433 0.88 +0.0 205,862 - MPMX19_06433 0.88 -0.7 205,889 + +0.4 205,923 + -0.4 205,923 + -1.3 205,923 + -0.2 205,923 + -0.8 205,923 + +0.0 205,923 + -0.7 205,923 + -0.6 205,923 + -0.9 205,923 + -0.2 205,923 + +0.6 205,924 - -0.3 205,924 - -0.3 205,924 - +0.8 205,924 - +0.7 205,924 - -1.1 205,924 - -1.3 205,924 - -1.1 205,924 - -0.4 205,924 - -0.8 205,924 - -1.2 205,924 - +1.1 205,947 + -1.1 205,947 + -1.1 205,947 + -1.7 205,947 + +1.6 205,947 + -0.7 205,947 + -1.3 205,947 + -1.0 205,947 + -1.5 205,947 + -0.6 205,947 + +1.1 205,947 + -0.2 205,947 + -2.6 205,947 + -1.9 205,947 + -1.3 205,948 - -0.3 205,948 - +0.6 205,948 - +0.4 205,948 - -1.4 205,948 - +1.3 205,948 - -1.5 205,948 - +1.0 205,948 - +0.0 205,948 - +0.4 205,948 - -2.4 205,948 - -0.7 205,948 - +0.8 205,948 - +0.0 205,949 + +1.1 205,949 + +1.0 205,949 + -1.8 205,949 + -0.3 205,949 + -0.8 205,950 - -1.4 205,950 - +0.3 205,950 - +0.1 206,015 + -0.6 206,015 + +0.2 206,015 + +0.1 206,015 + +0.1 206,015 + -1.7 206,015 + -1.0 206,015 + -1.0 206,015 + -1.7 206,016 - -1.5 206,016 - -0.6 206,016 - -0.3 206,016 - -0.7 206,016 - -0.0 206,016 - -0.3 206,016 - -0.3 206,154 + MPMX19_06434 0.12 +0.6 206,155 - MPMX19_06434 0.12 -0.1 206,346 - MPMX19_06434 0.29 +0.5 206,379 + MPMX19_06434 0.32 +0.7 206,380 - MPMX19_06434 0.32 -0.8 206,380 - MPMX19_06434 0.32 +1.0 206,688 + MPMX19_06434 0.59 -0.6 206,689 - MPMX19_06434 0.59 +0.7 206,689 - MPMX19_06434 0.59 -0.5 206,710 + MPMX19_06434 0.61 -0.0 206,710 + MPMX19_06434 0.61 -1.2 206,711 - MPMX19_06434 0.61 -1.0 206,711 - MPMX19_06434 0.61 +0.3 206,711 - MPMX19_06434 0.61 -0.7 206,711 - MPMX19_06434 0.61 +0.4 206,811 + MPMX19_06434 0.70 -0.5 206,811 + MPMX19_06434 0.70 -2.0 206,811 + MPMX19_06434 0.70 -0.5 206,811 + MPMX19_06434 0.70 -0.6 206,811 + MPMX19_06434 0.70 -1.5 206,811 + MPMX19_06434 0.70 -0.0 206,812 - MPMX19_06434 0.70 +1.8 206,812 - MPMX19_06434 0.70 +0.3 206,812 - MPMX19_06434 0.70 -1.9 206,812 - MPMX19_06434 0.70 -0.2 206,812 - MPMX19_06434 0.70 -0.9 206,812 - MPMX19_06434 0.70 -1.6 206,812 - MPMX19_06434 0.70 +0.1 206,812 - MPMX19_06434 0.70 +0.6 206,850 + MPMX19_06434 0.73 -2.0 206,860 + MPMX19_06434 0.74 +0.3 206,860 + MPMX19_06434 0.74 +0.4 206,861 - MPMX19_06434 0.74 -0.4 206,901 + MPMX19_06434 0.78 -0.4 206,902 - MPMX19_06434 0.78 +0.3
Or see this region's nucleotide sequence