Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06197 and MPMX19_06198 are separated by 72 nucleotides MPMX19_06198 and MPMX19_06199 are separated by 57 nucleotides MPMX19_06199 and MPMX19_06200 are separated by 366 nucleotides
MPMX19_06197: MPMX19_06197 - hypothetical protein, at 384,931 to 385,536
_06197
MPMX19_06198: MPMX19_06198 - hypothetical protein, at 385,609 to 385,992
_06198
MPMX19_06199: MPMX19_06199 - GTPase HflX, at 386,050 to 387,396
_06199
MPMX19_06200: MPMX19_06200 - hypothetical protein, at 387,763 to 388,926
_06200
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.100 kb on - strand, within MPMX19_06197 at 385.100 kb on - strand, within MPMX19_06197 at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.477 kb on + strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.478 kb on - strand at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.750 kb on + strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.751 kb on - strand, within MPMX19_06198 at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.966 kb on + strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.967 kb on - strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.990 kb on + strand at 385.991 kb on - strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.171 kb on + strand at 386.172 kb on - strand at 386.172 kb on - strand at 386.172 kb on - strand at 386.721 kb on - strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.945 kb on + strand, within MPMX19_06199 at 386.946 kb on - strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.234 kb on + strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.235 kb on - strand, within MPMX19_06199 at 387.390 kb on + strand at 387.390 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.606 kb on + strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.607 kb on - strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.671 kb on + strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.672 kb on - strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.705 kb on + strand at 387.706 kb on - strand at 387.706 kb on - strand at 387.706 kb on - strand at 387.706 kb on - strand at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.130 kb on + strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.131 kb on - strand, within MPMX19_06200 at 388.199 kb on + strand, within MPMX19_06200 at 388.199 kb on + strand, within MPMX19_06200 at 388.200 kb on - strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.226 kb on + strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.227 kb on - strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.376 kb on + strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200 at 388.377 kb on - strand, within MPMX19_06200
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 385,100 - MPMX19_06197 0.28 -0.7 385,100 - MPMX19_06197 0.28 +0.9 385,477 + -0.0 385,477 + -0.5 385,477 + -1.0 385,477 + -2.9 385,477 + +0.6 385,477 + -1.3 385,477 + -1.1 385,477 + -0.2 385,478 - +1.3 385,478 - -0.4 385,478 - -1.7 385,478 - +0.1 385,478 - +0.4 385,478 - -1.7 385,750 + MPMX19_06198 0.37 -0.6 385,750 + MPMX19_06198 0.37 +1.5 385,750 + MPMX19_06198 0.37 -0.9 385,750 + MPMX19_06198 0.37 +0.7 385,750 + MPMX19_06198 0.37 -0.4 385,750 + MPMX19_06198 0.37 -0.2 385,750 + MPMX19_06198 0.37 +0.1 385,750 + MPMX19_06198 0.37 -1.3 385,750 + MPMX19_06198 0.37 -1.1 385,750 + MPMX19_06198 0.37 +0.4 385,751 - MPMX19_06198 0.37 +0.3 385,751 - MPMX19_06198 0.37 -0.7 385,751 - MPMX19_06198 0.37 -0.1 385,751 - MPMX19_06198 0.37 +0.0 385,751 - MPMX19_06198 0.37 +1.8 385,966 + +0.0 385,966 + +0.6 385,966 + +0.5 385,966 + -0.5 385,966 + -0.6 385,966 + -1.2 385,966 + -0.5 385,966 + -0.2 385,966 + -0.2 385,967 - -0.7 385,967 - +1.8 385,967 - +0.0 385,967 - -0.2 385,967 - -0.2 385,967 - +0.4 385,967 - -0.4 385,967 - -1.3 385,967 - +0.8 385,967 - -0.9 385,990 + -0.7 385,990 + -0.6 385,990 + -2.2 385,991 - -0.1 386,171 + -1.2 386,171 + -0.2 386,171 + -1.3 386,172 - +0.3 386,172 - -2.2 386,172 - -0.6 386,721 - MPMX19_06199 0.50 -0.3 386,945 + MPMX19_06199 0.66 -0.2 386,945 + MPMX19_06199 0.66 -1.1 386,945 + MPMX19_06199 0.66 -0.0 386,946 - MPMX19_06199 0.67 -1.0 387,234 + MPMX19_06199 0.88 -1.1 387,234 + MPMX19_06199 0.88 +0.3 387,234 + MPMX19_06199 0.88 -1.5 387,234 + MPMX19_06199 0.88 +0.0 387,234 + MPMX19_06199 0.88 -0.5 387,235 - MPMX19_06199 0.88 -0.8 387,235 - MPMX19_06199 0.88 -1.6 387,235 - MPMX19_06199 0.88 -1.0 387,235 - MPMX19_06199 0.88 -2.8 387,235 - MPMX19_06199 0.88 -1.0 387,235 - MPMX19_06199 0.88 +1.8 387,235 - MPMX19_06199 0.88 -1.0 387,390 + -0.2 387,390 + +0.7 387,606 + -1.5 387,606 + -0.6 387,606 + -1.0 387,606 + -0.3 387,606 + -1.0 387,606 + -1.0 387,606 + +0.5 387,606 + +0.2 387,606 + -0.6 387,606 + +1.3 387,606 + -0.6 387,606 + +1.4 387,606 + -0.5 387,606 + +0.4 387,606 + +1.1 387,607 - +0.1 387,607 - -2.0 387,607 - -0.5 387,607 - -1.9 387,607 - +0.3 387,607 - -0.7 387,607 - -2.1 387,607 - -0.9 387,607 - -0.0 387,607 - -0.9 387,607 - -0.2 387,607 - +0.4 387,607 - +0.5 387,607 - -0.5 387,607 - +0.4 387,671 + +0.5 387,671 + -1.0 387,671 + -1.4 387,671 + -0.5 387,671 + -1.0 387,671 + -1.6 387,672 - +0.1 387,672 - +1.2 387,672 - -1.5 387,672 - +0.4 387,672 - +1.4 387,672 - -1.9 387,672 - -0.5 387,672 - -0.5 387,672 - -1.3 387,672 - -2.9 387,705 + +0.5 387,705 + -0.3 387,705 + -1.0 387,705 + +0.3 387,705 + -0.3 387,705 + -2.2 387,705 + -0.0 387,706 - -1.2 387,706 - -0.3 387,706 - -1.0 387,706 - -1.3 388,130 + MPMX19_06200 0.32 -0.3 388,130 + MPMX19_06200 0.32 -0.1 388,130 + MPMX19_06200 0.32 +0.1 388,130 + MPMX19_06200 0.32 +0.6 388,130 + MPMX19_06200 0.32 +0.3 388,130 + MPMX19_06200 0.32 -0.4 388,130 + MPMX19_06200 0.32 -1.5 388,130 + MPMX19_06200 0.32 -0.0 388,130 + MPMX19_06200 0.32 +0.6 388,130 + MPMX19_06200 0.32 -1.6 388,131 - MPMX19_06200 0.32 +0.7 388,131 - MPMX19_06200 0.32 -0.0 388,131 - MPMX19_06200 0.32 +0.0 388,131 - MPMX19_06200 0.32 +0.4 388,131 - MPMX19_06200 0.32 -0.2 388,131 - MPMX19_06200 0.32 -0.5 388,131 - MPMX19_06200 0.32 +1.5 388,131 - MPMX19_06200 0.32 -1.5 388,131 - MPMX19_06200 0.32 -2.0 388,131 - MPMX19_06200 0.32 -1.6 388,131 - MPMX19_06200 0.32 -0.7 388,131 - MPMX19_06200 0.32 +1.8 388,131 - MPMX19_06200 0.32 -0.5 388,199 + MPMX19_06200 0.37 -0.3 388,199 + MPMX19_06200 0.37 +0.5 388,200 - MPMX19_06200 0.38 +0.0 388,226 + MPMX19_06200 0.40 -0.5 388,226 + MPMX19_06200 0.40 +0.1 388,226 + MPMX19_06200 0.40 +0.8 388,226 + MPMX19_06200 0.40 -0.1 388,226 + MPMX19_06200 0.40 -0.5 388,226 + MPMX19_06200 0.40 +0.5 388,226 + MPMX19_06200 0.40 -0.2 388,227 - MPMX19_06200 0.40 +1.3 388,227 - MPMX19_06200 0.40 +0.1 388,227 - MPMX19_06200 0.40 -0.2 388,227 - MPMX19_06200 0.40 -0.7 388,227 - MPMX19_06200 0.40 -0.2 388,227 - MPMX19_06200 0.40 -1.0 388,376 + MPMX19_06200 0.53 +1.6 388,376 + MPMX19_06200 0.53 -0.0 388,376 + MPMX19_06200 0.53 +1.1 388,376 + MPMX19_06200 0.53 +0.5 388,376 + MPMX19_06200 0.53 +0.5 388,376 + MPMX19_06200 0.53 -1.6 388,377 - MPMX19_06200 0.53 -2.5 388,377 - MPMX19_06200 0.53 +0.1 388,377 - MPMX19_06200 0.53 -0.3 388,377 - MPMX19_06200 0.53 +0.3 388,377 - MPMX19_06200 0.53 -0.0 388,377 - MPMX19_06200 0.53 -0.5 388,377 - MPMX19_06200 0.53 -0.6 388,377 - MPMX19_06200 0.53 -1.1 388,377 - MPMX19_06200 0.53 -1.0 388,377 - MPMX19_06200 0.53 +1.0
Or see this region's nucleotide sequence