Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05156

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05155 and MPMX19_05156 are separated by 124 nucleotidesMPMX19_05156 and MPMX19_05157 are separated by 319 nucleotides MPMX19_05155: MPMX19_05155 - hypothetical protein, at 653,116 to 654,681 _05155 MPMX19_05156: MPMX19_05156 - hypothetical protein, at 654,806 to 655,540 _05156 MPMX19_05157: MPMX19_05157 - hypothetical protein, at 655,860 to 656,849 _05157 Position (kb) 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 653.806 kb on - strand, within MPMX19_05155at 654.431 kb on + strand, within MPMX19_05155at 654.431 kb on + strand, within MPMX19_05155at 654.431 kb on + strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.432 kb on - strand, within MPMX19_05155at 654.550 kb on - strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.581 kb on + strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.582 kb on - strandat 654.654 kb on + strandat 654.654 kb on + strandat 654.654 kb on + strandat 654.655 kb on - strandat 654.668 kb on + strandat 654.685 kb on + strandat 654.686 kb on - strandat 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.005 kb on + strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.006 kb on - strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.017 kb on + strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.018 kb on - strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.146 kb on + strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.147 kb on - strand, within MPMX19_05156at 655.287 kb on + strand, within MPMX19_05156at 655.299 kb on + strand, within MPMX19_05156at 655.299 kb on + strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.300 kb on - strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.372 kb on + strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.373 kb on - strand, within MPMX19_05156at 655.443 kb on + strand, within MPMX19_05156at 655.444 kb on - strand, within MPMX19_05156at 655.444 kb on - strand, within MPMX19_05156at 655.478 kb on - strandat 655.561 kb on + strandat 655.561 kb on + strandat 655.675 kb on - strandat 655.683 kb on + strandat 656.098 kb on - strand, within MPMX19_05157at 656.253 kb on + strand, within MPMX19_05157at 656.254 kb on - strand, within MPMX19_05157

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
653,806 - MPMX19_05155 0.44 -2.0
653,806 - MPMX19_05155 0.44 -1.9
653,806 - MPMX19_05155 0.44 -1.3
653,806 - MPMX19_05155 0.44 -0.1
653,806 - MPMX19_05155 0.44 +0.5
653,806 - MPMX19_05155 0.44 -0.5
653,806 - MPMX19_05155 0.44 -0.9
653,806 - MPMX19_05155 0.44 -0.6
653,806 - MPMX19_05155 0.44 +0.7
653,806 - MPMX19_05155 0.44 +1.4
653,806 - MPMX19_05155 0.44 -0.5
654,431 + MPMX19_05155 0.84 -1.7
654,431 + MPMX19_05155 0.84 +1.1
654,431 + MPMX19_05155 0.84 -0.3
654,432 - MPMX19_05155 0.84 -1.1
654,432 - MPMX19_05155 0.84 -0.3
654,432 - MPMX19_05155 0.84 -0.9
654,432 - MPMX19_05155 0.84 +0.3
654,432 - MPMX19_05155 0.84 -0.6
654,550 - +0.8
654,581 + -1.4
654,581 + -0.9
654,581 + -1.6
654,581 + +0.7
654,581 + +1.5
654,582 - -0.5
654,582 - -0.3
654,582 - -0.3
654,582 - -0.3
654,582 - -0.8
654,582 - +0.4
654,582 - -1.1
654,582 - +0.4
654,654 + -0.6
654,654 + -0.6
654,654 + -1.3
654,655 - -0.1
654,668 + -0.2
654,685 + -0.6
654,686 - -0.3
655,005 + MPMX19_05156 0.27 +0.4
655,005 + MPMX19_05156 0.27 +0.1
655,005 + MPMX19_05156 0.27 +0.7
655,005 + MPMX19_05156 0.27 -0.2
655,006 - MPMX19_05156 0.27 -0.4
655,006 - MPMX19_05156 0.27 -0.5
655,006 - MPMX19_05156 0.27 +0.5
655,006 - MPMX19_05156 0.27 -0.1
655,006 - MPMX19_05156 0.27 -1.4
655,017 + MPMX19_05156 0.29 -0.3
655,017 + MPMX19_05156 0.29 +0.5
655,017 + MPMX19_05156 0.29 -1.2
655,017 + MPMX19_05156 0.29 +0.4
655,017 + MPMX19_05156 0.29 -1.1
655,018 - MPMX19_05156 0.29 +0.6
655,018 - MPMX19_05156 0.29 -0.2
655,018 - MPMX19_05156 0.29 -0.6
655,018 - MPMX19_05156 0.29 +0.1
655,018 - MPMX19_05156 0.29 +0.1
655,018 - MPMX19_05156 0.29 -0.6
655,018 - MPMX19_05156 0.29 -1.7
655,146 + MPMX19_05156 0.46 +0.8
655,146 + MPMX19_05156 0.46 -0.1
655,146 + MPMX19_05156 0.46 +0.2
655,146 + MPMX19_05156 0.46 +1.7
655,146 + MPMX19_05156 0.46 -0.6
655,146 + MPMX19_05156 0.46 +2.5
655,147 - MPMX19_05156 0.46 +0.7
655,147 - MPMX19_05156 0.46 +0.7
655,147 - MPMX19_05156 0.46 +0.5
655,147 - MPMX19_05156 0.46 -0.4
655,147 - MPMX19_05156 0.46 -0.8
655,287 + MPMX19_05156 0.65 -0.5
655,299 + MPMX19_05156 0.67 -1.3
655,299 + MPMX19_05156 0.67 -1.6
655,300 - MPMX19_05156 0.67 +1.7
655,300 - MPMX19_05156 0.67 -1.6
655,300 - MPMX19_05156 0.67 +0.1
655,372 + MPMX19_05156 0.77 -0.4
655,372 + MPMX19_05156 0.77 +0.3
655,372 + MPMX19_05156 0.77 +1.7
655,372 + MPMX19_05156 0.77 -1.7
655,372 + MPMX19_05156 0.77 +0.1
655,372 + MPMX19_05156 0.77 -1.0
655,372 + MPMX19_05156 0.77 -0.3
655,373 - MPMX19_05156 0.77 +0.5
655,373 - MPMX19_05156 0.77 -0.9
655,373 - MPMX19_05156 0.77 -0.5
655,373 - MPMX19_05156 0.77 +0.0
655,373 - MPMX19_05156 0.77 +0.1
655,373 - MPMX19_05156 0.77 -0.1
655,373 - MPMX19_05156 0.77 -0.1
655,373 - MPMX19_05156 0.77 -1.1
655,373 - MPMX19_05156 0.77 -1.1
655,373 - MPMX19_05156 0.77 -0.5
655,373 - MPMX19_05156 0.77 +0.2
655,443 + MPMX19_05156 0.87 -1.6
655,444 - MPMX19_05156 0.87 -0.5
655,444 - MPMX19_05156 0.87 -2.1
655,478 - +1.3
655,561 + +1.1
655,561 + +0.9
655,675 - -0.1
655,683 + -0.2
656,098 - MPMX19_05157 0.24 +0.1
656,253 + MPMX19_05157 0.40 -0.7
656,254 - MPMX19_05157 0.40 -0.8

Or see this region's nucleotide sequence