Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05151 and MPMX19_05152 are separated by 29 nucleotides MPMX19_05152 and MPMX19_05153 are separated by 32 nucleotides
MPMX19_05151: MPMX19_05151 - 2-aminoethylphosphonate--pyruvate transaminase, at 648,246 to 649,364
_05151
MPMX19_05152: MPMX19_05152 - Phosphonoacetaldehyde hydrolase, at 649,394 to 650,224
_05152
MPMX19_05153: MPMX19_05153 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 650,257 to 651,483
_05153
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2 at 648.519 kb on + strand, within MPMX19_05151 at 648.519 kb on + strand, within MPMX19_05151 at 648.520 kb on - strand, within MPMX19_05151 at 648.520 kb on - strand, within MPMX19_05151 at 649.194 kb on + strand, within MPMX19_05151 at 649.194 kb on + strand, within MPMX19_05151 at 649.194 kb on + strand, within MPMX19_05151 at 649.194 kb on + strand, within MPMX19_05151 at 649.194 kb on + strand, within MPMX19_05151 at 649.195 kb on - strand, within MPMX19_05151 at 649.227 kb on + strand, within MPMX19_05151 at 649.227 kb on + strand, within MPMX19_05151 at 649.227 kb on + strand, within MPMX19_05151 at 649.227 kb on + strand, within MPMX19_05151 at 649.227 kb on + strand, within MPMX19_05151 at 649.227 kb on + strand, within MPMX19_05151 at 649.227 kb on + strand, within MPMX19_05151 at 649.228 kb on - strand, within MPMX19_05151 at 649.406 kb on + strand at 649.407 kb on - strand at 649.419 kb on - strand at 649.419 kb on - strand at 649.419 kb on - strand at 649.419 kb on - strand at 649.673 kb on + strand, within MPMX19_05152 at 649.673 kb on + strand, within MPMX19_05152 at 649.673 kb on + strand, within MPMX19_05152 at 649.673 kb on + strand, within MPMX19_05152 at 649.673 kb on + strand, within MPMX19_05152 at 649.673 kb on + strand, within MPMX19_05152 at 649.674 kb on - strand, within MPMX19_05152 at 649.674 kb on - strand, within MPMX19_05152 at 649.674 kb on - strand, within MPMX19_05152 at 649.848 kb on - strand, within MPMX19_05152 at 650.144 kb on + strand at 650.144 kb on + strand at 650.144 kb on + strand at 650.144 kb on + strand at 650.144 kb on + strand at 650.145 kb on - strand at 650.145 kb on - strand at 650.145 kb on - strand at 650.145 kb on - strand at 650.145 kb on - strand at 650.145 kb on - strand at 650.145 kb on - strand at 650.145 kb on - strand at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.467 kb on + strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.468 kb on - strand, within MPMX19_05153 at 650.538 kb on + strand, within MPMX19_05153 at 650.538 kb on + strand, within MPMX19_05153 at 650.539 kb on - strand, within MPMX19_05153 at 650.539 kb on - strand, within MPMX19_05153 at 650.935 kb on + strand, within MPMX19_05153 at 650.936 kb on - strand, within MPMX19_05153 at 650.936 kb on - strand, within MPMX19_05153 at 650.936 kb on - strand, within MPMX19_05153 at 651.010 kb on + strand, within MPMX19_05153 at 651.010 kb on + strand, within MPMX19_05153 at 651.010 kb on + strand, within MPMX19_05153 at 651.010 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.208 kb on + strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153 at 651.209 kb on - strand, within MPMX19_05153
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 648,519 + MPMX19_05151 0.24 -2.0 648,519 + MPMX19_05151 0.24 +0.4 648,520 - MPMX19_05151 0.24 -0.3 648,520 - MPMX19_05151 0.24 -0.8 649,194 + MPMX19_05151 0.85 -0.2 649,194 + MPMX19_05151 0.85 +0.5 649,194 + MPMX19_05151 0.85 -0.5 649,194 + MPMX19_05151 0.85 -0.2 649,194 + MPMX19_05151 0.85 +0.4 649,195 - MPMX19_05151 0.85 -2.0 649,227 + MPMX19_05151 0.88 +0.5 649,227 + MPMX19_05151 0.88 -0.6 649,227 + MPMX19_05151 0.88 -1.3 649,227 + MPMX19_05151 0.88 +0.4 649,227 + MPMX19_05151 0.88 -2.1 649,227 + MPMX19_05151 0.88 -0.9 649,227 + MPMX19_05151 0.88 -0.6 649,228 - MPMX19_05151 0.88 +0.6 649,406 + +1.0 649,407 - +0.5 649,419 - +0.2 649,419 - -0.6 649,419 - -0.8 649,419 - -1.0 649,673 + MPMX19_05152 0.34 -0.5 649,673 + MPMX19_05152 0.34 -1.3 649,673 + MPMX19_05152 0.34 +0.5 649,673 + MPMX19_05152 0.34 -1.0 649,673 + MPMX19_05152 0.34 -0.8 649,673 + MPMX19_05152 0.34 -1.5 649,674 - MPMX19_05152 0.34 -1.3 649,674 - MPMX19_05152 0.34 -0.9 649,674 - MPMX19_05152 0.34 -0.3 649,848 - MPMX19_05152 0.55 +0.3 650,144 + -1.5 650,144 + -0.6 650,144 + -0.2 650,144 + +1.2 650,144 + -0.1 650,145 - -0.4 650,145 - -0.8 650,145 - -0.9 650,145 - -0.5 650,145 - -0.1 650,145 - +1.5 650,145 - -0.8 650,145 - -0.4 650,467 + MPMX19_05153 0.17 -0.3 650,467 + MPMX19_05153 0.17 -1.1 650,467 + MPMX19_05153 0.17 -1.9 650,467 + MPMX19_05153 0.17 +0.3 650,467 + MPMX19_05153 0.17 -0.0 650,467 + MPMX19_05153 0.17 -2.0 650,467 + MPMX19_05153 0.17 -1.9 650,467 + MPMX19_05153 0.17 -0.3 650,467 + MPMX19_05153 0.17 -1.9 650,467 + MPMX19_05153 0.17 -1.3 650,467 + MPMX19_05153 0.17 -1.5 650,467 + MPMX19_05153 0.17 -1.5 650,468 - MPMX19_05153 0.17 -1.1 650,468 - MPMX19_05153 0.17 +0.7 650,468 - MPMX19_05153 0.17 +0.5 650,468 - MPMX19_05153 0.17 -0.6 650,468 - MPMX19_05153 0.17 -2.1 650,468 - MPMX19_05153 0.17 -0.5 650,468 - MPMX19_05153 0.17 -1.3 650,468 - MPMX19_05153 0.17 -0.9 650,468 - MPMX19_05153 0.17 +1.2 650,468 - MPMX19_05153 0.17 -1.0 650,538 + MPMX19_05153 0.23 +0.2 650,538 + MPMX19_05153 0.23 -1.9 650,539 - MPMX19_05153 0.23 +0.4 650,539 - MPMX19_05153 0.23 +2.0 650,935 + MPMX19_05153 0.55 +0.9 650,936 - MPMX19_05153 0.55 -0.6 650,936 - MPMX19_05153 0.55 -0.1 650,936 - MPMX19_05153 0.55 -1.3 651,010 + MPMX19_05153 0.61 +0.0 651,010 + MPMX19_05153 0.61 -0.5 651,010 + MPMX19_05153 0.61 -0.2 651,010 + MPMX19_05153 0.61 -0.9 651,208 + MPMX19_05153 0.78 -0.6 651,208 + MPMX19_05153 0.78 +0.6 651,208 + MPMX19_05153 0.78 -0.2 651,208 + MPMX19_05153 0.78 -1.4 651,208 + MPMX19_05153 0.78 -0.5 651,208 + MPMX19_05153 0.78 -0.3 651,208 + MPMX19_05153 0.78 -0.3 651,208 + MPMX19_05153 0.78 -1.4 651,208 + MPMX19_05153 0.78 +0.6 651,208 + MPMX19_05153 0.78 +0.6 651,209 - MPMX19_05153 0.78 -0.3 651,209 - MPMX19_05153 0.78 -2.2 651,209 - MPMX19_05153 0.78 -0.1 651,209 - MPMX19_05153 0.78 -1.5 651,209 - MPMX19_05153 0.78 -1.3 651,209 - MPMX19_05153 0.78 -1.5 651,209 - MPMX19_05153 0.78 -1.4 651,209 - MPMX19_05153 0.78 +0.1 651,209 - MPMX19_05153 0.78 -0.9 651,209 - MPMX19_05153 0.78 -1.4 651,209 - MPMX19_05153 0.78 -1.0 651,209 - MPMX19_05153 0.78 -1.8
Or see this region's nucleotide sequence