Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05032 and MPMX19_05033 overlap by 38 nucleotides MPMX19_05033 and MPMX19_05034 are separated by 24 nucleotides MPMX19_05034 and MPMX19_05035 are separated by 5 nucleotides MPMX19_05035 and MPMX19_05036 overlap by 4 nucleotides MPMX19_05036 and MPMX19_05037 are separated by 1 nucleotides
MPMX19_05032: MPMX19_05032 - ATP synthase subunit alpha, at 519,206 to 520,735
_05032
MPMX19_05033: MPMX19_05033 - ATP synthase subunit b, at 520,698 to 521,471
_05033
MPMX19_05034: MPMX19_05034 - ATP synthase subunit c, at 521,496 to 521,735
_05034
MPMX19_05035: MPMX19_05035 - ATP synthase subunit a, at 521,741 to 522,415
_05035
MPMX19_05036: MPMX19_05036 - hypothetical protein, at 522,412 to 522,711
_05036
MPMX19_05037: MPMX19_05037 - hypothetical protein, at 522,713 to 522,991
_05037
Position (kb) 521
522 Strain fitness (log2 ratio) -2
-1
0
1 at 521.374 kb on - strand, within MPMX19_05033 at 521.545 kb on + strand, within MPMX19_05034 at 521.545 kb on + strand, within MPMX19_05034 at 521.545 kb on + strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.546 kb on - strand, within MPMX19_05034 at 521.742 kb on + strand at 521.743 kb on - strand at 521.743 kb on - strand at 521.743 kb on - strand at 521.805 kb on + strand at 521.805 kb on + strand at 521.805 kb on + strand at 521.805 kb on + strand at 521.805 kb on + strand at 521.805 kb on + strand at 521.805 kb on + strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 521.806 kb on - strand at 522.012 kb on + strand, within MPMX19_05035 at 522.012 kb on + strand, within MPMX19_05035 at 522.012 kb on + strand, within MPMX19_05035 at 522.012 kb on + strand, within MPMX19_05035 at 522.012 kb on + strand, within MPMX19_05035 at 522.012 kb on + strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.013 kb on - strand, within MPMX19_05035 at 522.153 kb on + strand, within MPMX19_05035 at 522.153 kb on + strand, within MPMX19_05035 at 522.154 kb on - strand, within MPMX19_05035 at 522.154 kb on - strand, within MPMX19_05035 at 522.154 kb on - strand, within MPMX19_05035 at 522.575 kb on + strand, within MPMX19_05036 at 522.575 kb on + strand, within MPMX19_05036 at 522.575 kb on + strand, within MPMX19_05036 at 522.575 kb on + strand, within MPMX19_05036 at 522.576 kb on - strand, within MPMX19_05036 at 522.576 kb on - strand, within MPMX19_05036 at 522.576 kb on - strand, within MPMX19_05036 at 522.604 kb on + strand, within MPMX19_05036 at 522.604 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.611 kb on + strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036 at 522.612 kb on - strand, within MPMX19_05036
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 521,374 - MPMX19_05033 0.87 +0.1 521,545 + MPMX19_05034 0.20 -1.0 521,545 + MPMX19_05034 0.20 -0.7 521,545 + MPMX19_05034 0.20 +1.1 521,546 - MPMX19_05034 0.21 -0.9 521,546 - MPMX19_05034 0.21 +0.9 521,546 - MPMX19_05034 0.21 -1.3 521,546 - MPMX19_05034 0.21 -1.7 521,546 - MPMX19_05034 0.21 +0.9 521,546 - MPMX19_05034 0.21 -0.6 521,546 - MPMX19_05034 0.21 +0.1 521,546 - MPMX19_05034 0.21 -0.6 521,546 - MPMX19_05034 0.21 -0.9 521,742 + -0.7 521,743 - -1.9 521,743 - +1.7 521,743 - -0.5 521,805 + -0.8 521,805 + -0.6 521,805 + +0.9 521,805 + -0.3 521,805 + -1.6 521,805 + +1.1 521,805 + -1.2 521,806 - -1.2 521,806 - -0.9 521,806 - +0.1 521,806 - +0.3 521,806 - -1.6 521,806 - +1.0 521,806 - -0.5 521,806 - -1.2 521,806 - -0.6 521,806 - -2.0 522,012 + MPMX19_05035 0.40 +0.3 522,012 + MPMX19_05035 0.40 +1.4 522,012 + MPMX19_05035 0.40 -0.3 522,012 + MPMX19_05035 0.40 -1.2 522,012 + MPMX19_05035 0.40 -1.0 522,012 + MPMX19_05035 0.40 +0.3 522,013 - MPMX19_05035 0.40 -1.0 522,013 - MPMX19_05035 0.40 -0.3 522,013 - MPMX19_05035 0.40 -0.3 522,013 - MPMX19_05035 0.40 -0.9 522,013 - MPMX19_05035 0.40 +0.9 522,013 - MPMX19_05035 0.40 -1.1 522,013 - MPMX19_05035 0.40 -0.2 522,013 - MPMX19_05035 0.40 -0.6 522,153 + MPMX19_05035 0.61 -1.6 522,153 + MPMX19_05035 0.61 -1.0 522,154 - MPMX19_05035 0.61 +0.4 522,154 - MPMX19_05035 0.61 +0.3 522,154 - MPMX19_05035 0.61 +0.2 522,575 + MPMX19_05036 0.54 +0.2 522,575 + MPMX19_05036 0.54 -0.4 522,575 + MPMX19_05036 0.54 +0.3 522,575 + MPMX19_05036 0.54 +1.1 522,576 - MPMX19_05036 0.55 +0.7 522,576 - MPMX19_05036 0.55 +0.7 522,576 - MPMX19_05036 0.55 -1.5 522,604 + MPMX19_05036 0.64 -0.1 522,604 + MPMX19_05036 0.64 -0.9 522,611 + MPMX19_05036 0.66 -1.9 522,611 + MPMX19_05036 0.66 -0.9 522,611 + MPMX19_05036 0.66 +0.0 522,611 + MPMX19_05036 0.66 -0.5 522,611 + MPMX19_05036 0.66 -0.9 522,611 + MPMX19_05036 0.66 -0.9 522,611 + MPMX19_05036 0.66 -0.4 522,611 + MPMX19_05036 0.66 -0.0 522,611 + MPMX19_05036 0.66 -1.4 522,612 - MPMX19_05036 0.67 +1.1 522,612 - MPMX19_05036 0.67 -0.3 522,612 - MPMX19_05036 0.67 +0.9 522,612 - MPMX19_05036 0.67 -0.7 522,612 - MPMX19_05036 0.67 -0.5 522,612 - MPMX19_05036 0.67 +0.1 522,612 - MPMX19_05036 0.67 -0.3 522,612 - MPMX19_05036 0.67 -0.1 522,612 - MPMX19_05036 0.67 -0.3 522,612 - MPMX19_05036 0.67 +1.7
Or see this region's nucleotide sequence