Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04936 and MPMX19_04937 are separated by 51 nucleotides MPMX19_04937 and MPMX19_04938 overlap by 4 nucleotides
MPMX19_04936: MPMX19_04936 - Urocanate hydratase, at 398,132 to 399,814
_04936
MPMX19_04937: MPMX19_04937 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 399,866 to 400,594
_04937
MPMX19_04938: MPMX19_04938 - Imidazolonepropionase, at 400,591 to 401,844
_04938
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1 at 398.982 kb on + strand, within MPMX19_04936 at 398.982 kb on + strand, within MPMX19_04936 at 398.982 kb on + strand, within MPMX19_04936 at 398.983 kb on - strand, within MPMX19_04936 at 399.187 kb on - strand, within MPMX19_04936 at 399.187 kb on - strand, within MPMX19_04936 at 399.336 kb on + strand, within MPMX19_04936 at 399.336 kb on + strand, within MPMX19_04936 at 399.336 kb on + strand, within MPMX19_04936 at 399.336 kb on + strand, within MPMX19_04936 at 399.336 kb on + strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.337 kb on - strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.369 kb on + strand, within MPMX19_04936 at 399.370 kb on - strand, within MPMX19_04936 at 399.370 kb on - strand, within MPMX19_04936 at 399.370 kb on - strand, within MPMX19_04936 at 399.370 kb on - strand, within MPMX19_04936 at 399.370 kb on - strand, within MPMX19_04936 at 399.402 kb on + strand, within MPMX19_04936 at 399.402 kb on + strand, within MPMX19_04936 at 399.402 kb on + strand, within MPMX19_04936 at 399.403 kb on - strand, within MPMX19_04936 at 399.403 kb on - strand, within MPMX19_04936 at 399.403 kb on - strand, within MPMX19_04936 at 399.403 kb on - strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.432 kb on + strand, within MPMX19_04936 at 399.433 kb on - strand, within MPMX19_04936 at 399.433 kb on - strand, within MPMX19_04936 at 399.433 kb on - strand, within MPMX19_04936 at 399.433 kb on - strand, within MPMX19_04936 at 399.433 kb on - strand, within MPMX19_04936 at 399.663 kb on + strand at 399.664 kb on - strand at 399.664 kb on - strand at 400.086 kb on + strand, within MPMX19_04937 at 400.086 kb on + strand, within MPMX19_04937 at 400.086 kb on + strand, within MPMX19_04937 at 400.086 kb on + strand, within MPMX19_04937 at 400.087 kb on - strand, within MPMX19_04937 at 400.087 kb on - strand, within MPMX19_04937 at 400.125 kb on + strand, within MPMX19_04937 at 400.125 kb on + strand, within MPMX19_04937 at 400.125 kb on + strand, within MPMX19_04937 at 400.126 kb on - strand, within MPMX19_04937 at 400.431 kb on - strand, within MPMX19_04937 at 400.431 kb on - strand, within MPMX19_04937 at 400.561 kb on - strand at 400.561 kb on - strand at 400.667 kb on - strand at 400.673 kb on + strand at 400.673 kb on + strand at 400.673 kb on + strand at 400.674 kb on - strand at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.958 kb on + strand, within MPMX19_04938 at 400.959 kb on - strand, within MPMX19_04938 at 400.959 kb on - strand, within MPMX19_04938 at 401.264 kb on + strand, within MPMX19_04938 at 401.265 kb on - strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.315 kb on + strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.316 kb on - strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.552 kb on + strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938 at 401.553 kb on - strand, within MPMX19_04938
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 398,982 + MPMX19_04936 0.51 +0.1 398,982 + MPMX19_04936 0.51 -0.5 398,982 + MPMX19_04936 0.51 +0.1 398,983 - MPMX19_04936 0.51 -1.5 399,187 - MPMX19_04936 0.63 -2.1 399,187 - MPMX19_04936 0.63 +0.4 399,336 + MPMX19_04936 0.72 -2.4 399,336 + MPMX19_04936 0.72 +0.2 399,336 + MPMX19_04936 0.72 -1.0 399,336 + MPMX19_04936 0.72 -1.5 399,336 + MPMX19_04936 0.72 -0.7 399,337 - MPMX19_04936 0.72 +0.9 399,337 - MPMX19_04936 0.72 +0.8 399,337 - MPMX19_04936 0.72 -0.4 399,337 - MPMX19_04936 0.72 -2.5 399,337 - MPMX19_04936 0.72 -1.5 399,337 - MPMX19_04936 0.72 -0.6 399,337 - MPMX19_04936 0.72 -0.8 399,337 - MPMX19_04936 0.72 +0.1 399,337 - MPMX19_04936 0.72 +0.1 399,337 - MPMX19_04936 0.72 -0.3 399,337 - MPMX19_04936 0.72 -1.6 399,337 - MPMX19_04936 0.72 -0.6 399,337 - MPMX19_04936 0.72 -0.3 399,369 + MPMX19_04936 0.73 -0.9 399,369 + MPMX19_04936 0.73 -0.6 399,369 + MPMX19_04936 0.73 -0.5 399,369 + MPMX19_04936 0.73 -0.9 399,369 + MPMX19_04936 0.73 -0.0 399,369 + MPMX19_04936 0.73 -0.9 399,369 + MPMX19_04936 0.73 -1.3 399,369 + MPMX19_04936 0.73 +0.4 399,370 - MPMX19_04936 0.74 -0.3 399,370 - MPMX19_04936 0.74 -0.6 399,370 - MPMX19_04936 0.74 -0.5 399,370 - MPMX19_04936 0.74 +1.2 399,370 - MPMX19_04936 0.74 -2.5 399,402 + MPMX19_04936 0.75 -0.1 399,402 + MPMX19_04936 0.75 +0.1 399,402 + MPMX19_04936 0.75 -0.0 399,403 - MPMX19_04936 0.76 +0.7 399,403 - MPMX19_04936 0.76 -0.3 399,403 - MPMX19_04936 0.76 -0.5 399,403 - MPMX19_04936 0.76 -0.0 399,432 + MPMX19_04936 0.77 -1.7 399,432 + MPMX19_04936 0.77 +0.1 399,432 + MPMX19_04936 0.77 -0.6 399,432 + MPMX19_04936 0.77 +0.3 399,432 + MPMX19_04936 0.77 -0.9 399,432 + MPMX19_04936 0.77 -0.6 399,432 + MPMX19_04936 0.77 -0.6 399,432 + MPMX19_04936 0.77 -0.2 399,433 - MPMX19_04936 0.77 -0.2 399,433 - MPMX19_04936 0.77 -0.2 399,433 - MPMX19_04936 0.77 -0.5 399,433 - MPMX19_04936 0.77 -0.3 399,433 - MPMX19_04936 0.77 +1.3 399,663 + +0.1 399,664 - +0.5 399,664 - +0.7 400,086 + MPMX19_04937 0.30 -0.6 400,086 + MPMX19_04937 0.30 -0.5 400,086 + MPMX19_04937 0.30 -1.4 400,086 + MPMX19_04937 0.30 -0.9 400,087 - MPMX19_04937 0.30 -2.4 400,087 - MPMX19_04937 0.30 -0.4 400,125 + MPMX19_04937 0.36 +0.0 400,125 + MPMX19_04937 0.36 -0.1 400,125 + MPMX19_04937 0.36 -1.1 400,126 - MPMX19_04937 0.36 -1.5 400,431 - MPMX19_04937 0.78 +0.9 400,431 - MPMX19_04937 0.78 -1.0 400,561 - -1.2 400,561 - -0.0 400,667 - +1.5 400,673 + -1.1 400,673 + -0.5 400,673 + -0.1 400,674 - +0.5 400,958 + MPMX19_04938 0.29 -1.3 400,958 + MPMX19_04938 0.29 +0.7 400,958 + MPMX19_04938 0.29 -1.5 400,958 + MPMX19_04938 0.29 -0.3 400,958 + MPMX19_04938 0.29 +0.5 400,958 + MPMX19_04938 0.29 -1.1 400,958 + MPMX19_04938 0.29 -2.2 400,958 + MPMX19_04938 0.29 +0.4 400,958 + MPMX19_04938 0.29 -0.7 400,959 - MPMX19_04938 0.29 +0.1 400,959 - MPMX19_04938 0.29 +0.2 401,264 + MPMX19_04938 0.54 -0.0 401,265 - MPMX19_04938 0.54 -1.6 401,315 + MPMX19_04938 0.58 -1.9 401,315 + MPMX19_04938 0.58 -0.3 401,315 + MPMX19_04938 0.58 -0.6 401,315 + MPMX19_04938 0.58 -0.5 401,315 + MPMX19_04938 0.58 -1.9 401,315 + MPMX19_04938 0.58 -0.6 401,315 + MPMX19_04938 0.58 -0.1 401,315 + MPMX19_04938 0.58 +1.0 401,315 + MPMX19_04938 0.58 -1.5 401,315 + MPMX19_04938 0.58 +1.7 401,315 + MPMX19_04938 0.58 -0.7 401,316 - MPMX19_04938 0.58 +0.2 401,316 - MPMX19_04938 0.58 -2.7 401,316 - MPMX19_04938 0.58 -0.4 401,316 - MPMX19_04938 0.58 +0.9 401,316 - MPMX19_04938 0.58 -1.5 401,316 - MPMX19_04938 0.58 +1.0 401,316 - MPMX19_04938 0.58 -0.6 401,316 - MPMX19_04938 0.58 +0.3 401,316 - MPMX19_04938 0.58 -1.6 401,316 - MPMX19_04938 0.58 -0.9 401,316 - MPMX19_04938 0.58 -1.7 401,316 - MPMX19_04938 0.58 -0.9 401,552 + MPMX19_04938 0.77 +0.3 401,552 + MPMX19_04938 0.77 -1.4 401,552 + MPMX19_04938 0.77 -0.8 401,552 + MPMX19_04938 0.77 -0.9 401,552 + MPMX19_04938 0.77 -1.6 401,552 + MPMX19_04938 0.77 +0.4 401,552 + MPMX19_04938 0.77 -0.5 401,552 + MPMX19_04938 0.77 -1.1 401,552 + MPMX19_04938 0.77 -0.6 401,552 + MPMX19_04938 0.77 +0.9 401,552 + MPMX19_04938 0.77 -0.6 401,552 + MPMX19_04938 0.77 +0.9 401,552 + MPMX19_04938 0.77 +0.3 401,552 + MPMX19_04938 0.77 -1.0 401,552 + MPMX19_04938 0.77 -2.2 401,553 - MPMX19_04938 0.77 -0.2 401,553 - MPMX19_04938 0.77 -0.3 401,553 - MPMX19_04938 0.77 -1.1 401,553 - MPMX19_04938 0.77 -1.7 401,553 - MPMX19_04938 0.77 -0.4 401,553 - MPMX19_04938 0.77 +0.3 401,553 - MPMX19_04938 0.77 -0.8 401,553 - MPMX19_04938 0.77 -1.1 401,553 - MPMX19_04938 0.77 -0.3 401,553 - MPMX19_04938 0.77 -0.5 401,553 - MPMX19_04938 0.77 -1.6 401,553 - MPMX19_04938 0.77 -1.3
Or see this region's nucleotide sequence