Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04738

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04736 and MPMX19_04737 are separated by 13 nucleotidesMPMX19_04737 and MPMX19_04738 overlap by 26 nucleotidesMPMX19_04738 and MPMX19_04739 overlap by 19 nucleotidesMPMX19_04739 and MPMX19_04740 are separated by 50 nucleotides MPMX19_04736: MPMX19_04736 - hypothetical protein, at 126,792 to 127,709 _04736 MPMX19_04737: MPMX19_04737 - Methenyltetrahydromethanopterin cyclohydrolase, at 127,723 to 128,688 _04737 MPMX19_04738: MPMX19_04738 - hypothetical protein, at 128,663 to 129,841 _04738 MPMX19_04739: MPMX19_04739 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 129,823 to 130,725 _04739 MPMX19_04740: MPMX19_04740 - hypothetical protein, at 130,776 to 131,810 _04740 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1at 127.765 kb on + strandat 127.766 kb on - strandat 127.898 kb on + strand, within MPMX19_04737at 127.899 kb on - strand, within MPMX19_04737at 127.899 kb on - strand, within MPMX19_04737at 128.396 kb on + strand, within MPMX19_04737at 128.396 kb on + strand, within MPMX19_04737at 128.396 kb on + strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.397 kb on - strand, within MPMX19_04737at 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.707 kb on + strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.708 kb on - strandat 128.907 kb on + strand, within MPMX19_04738at 128.908 kb on - strand, within MPMX19_04738at 129.327 kb on + strand, within MPMX19_04738at 129.327 kb on + strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738at 129.328 kb on - strand, within MPMX19_04738at 129.881 kb on + strandat 129.881 kb on + strandat 129.881 kb on + strandat 129.881 kb on + strandat 129.882 kb on - strandat 129.882 kb on - strandat 129.882 kb on - strandat 129.882 kb on - strandat 130.220 kb on + strand, within MPMX19_04739at 130.221 kb on - strand, within MPMX19_04739at 130.221 kb on - strand, within MPMX19_04739at 130.424 kb on + strand, within MPMX19_04739at 130.424 kb on + strand, within MPMX19_04739at 130.424 kb on + strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.622 kb on + strand, within MPMX19_04739at 130.622 kb on + strand, within MPMX19_04739at 130.710 kb on + strandat 130.769 kb on + strandat 130.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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127,765 + -0.4
127,766 - -1.8
127,898 + MPMX19_04737 0.18 -0.6
127,899 - MPMX19_04737 0.18 +1.7
127,899 - MPMX19_04737 0.18 +0.7
128,396 + MPMX19_04737 0.70 -1.0
128,396 + MPMX19_04737 0.70 -0.5
128,396 + MPMX19_04737 0.70 -0.6
128,397 - MPMX19_04737 0.70 +1.0
128,397 - MPMX19_04737 0.70 -0.2
128,397 - MPMX19_04737 0.70 -0.1
128,397 - MPMX19_04737 0.70 -0.9
128,707 + +1.7
128,707 + -0.9
128,707 + +0.7
128,707 + -0.3
128,707 + +0.2
128,707 + -1.1
128,707 + +0.2
128,707 + +0.5
128,707 + +0.8
128,707 + -0.3
128,707 + +0.1
128,707 + +0.3
128,707 + -0.6
128,707 + -1.0
128,708 - -1.5
128,708 - -0.4
128,708 - +0.1
128,708 - +1.2
128,708 - +0.3
128,907 + MPMX19_04738 0.21 -1.3
128,908 - MPMX19_04738 0.21 -1.4
129,327 + MPMX19_04738 0.56 -0.3
129,327 + MPMX19_04738 0.56 -1.6
129,328 - MPMX19_04738 0.56 -0.5
129,328 - MPMX19_04738 0.56 -0.3
129,328 - MPMX19_04738 0.56 -0.6
129,328 - MPMX19_04738 0.56 +0.1
129,881 + +0.5
129,881 + +0.7
129,881 + -1.1
129,881 + +0.6
129,882 - +0.4
129,882 - -0.6
129,882 - -0.9
129,882 - +0.0
130,220 + MPMX19_04739 0.44 -0.6
130,221 - MPMX19_04739 0.44 -1.8
130,221 - MPMX19_04739 0.44 -0.3
130,424 + MPMX19_04739 0.67 +0.1
130,424 + MPMX19_04739 0.67 +0.9
130,424 + MPMX19_04739 0.67 -0.6
130,425 - MPMX19_04739 0.67 +0.7
130,425 - MPMX19_04739 0.67 -0.8
130,425 - MPMX19_04739 0.67 -0.9
130,425 - MPMX19_04739 0.67 -0.3
130,425 - MPMX19_04739 0.67 -0.4
130,622 + MPMX19_04739 0.88 -1.0
130,622 + MPMX19_04739 0.88 +1.0
130,710 + -0.6
130,769 + +0.1
130,774 - -0.8

Or see this region's nucleotide sequence