Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04241

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04239 and MPMX19_04240 overlap by 14 nucleotidesMPMX19_04240 and MPMX19_04241 overlap by 4 nucleotidesMPMX19_04241 and MPMX19_04242 are separated by 11 nucleotidesMPMX19_04242 and MPMX19_04243 overlap by 4 nucleotides MPMX19_04239: MPMX19_04239 - hypothetical protein, at 587,611 to 588,567 _04239 MPMX19_04240: MPMX19_04240 - Lipopolysaccharide export system ATP-binding protein LptB, at 588,554 to 589,279 _04240 MPMX19_04241: MPMX19_04241 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 589,276 to 589,998 _04241 MPMX19_04242: MPMX19_04242 - hypothetical protein, at 590,010 to 590,441 _04242 MPMX19_04243: MPMX19_04243 - 2,3-dehydroadipyl-CoA hydratase, at 590,438 to 591,217 _04243 Position (kb) 589 590Strain fitness (log2 ratio) -2 -1 0 1 2at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.310 kb on + strand, within MPMX19_04239at 588.311 kb on - strand, within MPMX19_04239at 588.311 kb on - strand, within MPMX19_04239at 588.311 kb on - strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.409 kb on + strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.410 kb on - strand, within MPMX19_04239at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.702 kb on + strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 588.703 kb on - strand, within MPMX19_04240at 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.244 kb on + strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.245 kb on - strandat 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.897 kb on + strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.898 kb on - strand, within MPMX19_04241at 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.972 kb on + strandat 589.973 kb on - strandat 590.064 kb on + strand, within MPMX19_04242at 590.064 kb on + strand, within MPMX19_04242at 590.065 kb on - strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.202 kb on + strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.203 kb on - strand, within MPMX19_04242at 590.204 kb on - strand, within MPMX19_04242at 590.283 kb on - strand, within MPMX19_04242at 590.283 kb on - strand, within MPMX19_04242at 590.400 kb on + strandat 590.401 kb on - strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.437 kb on + strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.438 kb on - strandat 590.840 kb on + strand, within MPMX19_04243at 590.840 kb on + strand, within MPMX19_04243at 590.840 kb on + strand, within MPMX19_04243at 590.840 kb on + strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243at 590.841 kb on - strand, within MPMX19_04243

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
588,310 + MPMX19_04239 0.73 -0.9
588,310 + MPMX19_04239 0.73 +0.0
588,310 + MPMX19_04239 0.73 +1.2
588,310 + MPMX19_04239 0.73 -1.2
588,310 + MPMX19_04239 0.73 -0.1
588,310 + MPMX19_04239 0.73 +0.9
588,311 - MPMX19_04239 0.73 -0.7
588,311 - MPMX19_04239 0.73 -0.8
588,311 - MPMX19_04239 0.73 +1.8
588,409 + MPMX19_04239 0.83 +0.1
588,409 + MPMX19_04239 0.83 -1.1
588,409 + MPMX19_04239 0.83 -1.8
588,409 + MPMX19_04239 0.83 +0.4
588,409 + MPMX19_04239 0.83 -0.8
588,409 + MPMX19_04239 0.83 -0.0
588,409 + MPMX19_04239 0.83 -0.8
588,409 + MPMX19_04239 0.83 -0.4
588,409 + MPMX19_04239 0.83 -0.0
588,409 + MPMX19_04239 0.83 -0.1
588,409 + MPMX19_04239 0.83 +0.1
588,410 - MPMX19_04239 0.83 +0.8
588,410 - MPMX19_04239 0.83 -0.5
588,410 - MPMX19_04239 0.83 +0.7
588,410 - MPMX19_04239 0.83 +0.2
588,410 - MPMX19_04239 0.83 +0.2
588,410 - MPMX19_04239 0.83 +0.2
588,410 - MPMX19_04239 0.83 +0.1
588,410 - MPMX19_04239 0.83 -0.2
588,410 - MPMX19_04239 0.83 +0.5
588,410 - MPMX19_04239 0.83 +0.6
588,702 + MPMX19_04240 0.20 +0.8
588,702 + MPMX19_04240 0.20 -1.2
588,702 + MPMX19_04240 0.20 +1.3
588,702 + MPMX19_04240 0.20 +0.2
588,702 + MPMX19_04240 0.20 -1.2
588,703 - MPMX19_04240 0.21 -1.1
588,703 - MPMX19_04240 0.21 +1.8
588,703 - MPMX19_04240 0.21 -0.6
588,703 - MPMX19_04240 0.21 -0.8
589,244 + -0.1
589,244 + -0.5
589,244 + -1.6
589,244 + +0.0
589,244 + +1.2
589,244 + +0.6
589,244 + -1.2
589,244 + -1.4
589,244 + -0.2
589,244 + -0.8
589,245 - -0.6
589,245 - +0.1
589,245 - -0.0
589,245 - -0.2
589,245 - +0.5
589,245 - +0.2
589,245 - -1.4
589,245 - +1.2
589,245 - +0.6
589,245 - -0.3
589,245 - +0.9
589,897 + MPMX19_04241 0.86 -2.2
589,897 + MPMX19_04241 0.86 -2.6
589,897 + MPMX19_04241 0.86 -0.1
589,897 + MPMX19_04241 0.86 -1.0
589,897 + MPMX19_04241 0.86 -1.8
589,897 + MPMX19_04241 0.86 +0.6
589,897 + MPMX19_04241 0.86 -0.7
589,897 + MPMX19_04241 0.86 -1.6
589,897 + MPMX19_04241 0.86 -0.3
589,897 + MPMX19_04241 0.86 -1.2
589,897 + MPMX19_04241 0.86 -0.8
589,897 + MPMX19_04241 0.86 -0.2
589,898 - MPMX19_04241 0.86 -0.9
589,898 - MPMX19_04241 0.86 -2.1
589,898 - MPMX19_04241 0.86 -0.8
589,898 - MPMX19_04241 0.86 +2.2
589,898 - MPMX19_04241 0.86 -0.5
589,898 - MPMX19_04241 0.86 -0.7
589,898 - MPMX19_04241 0.86 -0.2
589,898 - MPMX19_04241 0.86 -2.4
589,898 - MPMX19_04241 0.86 -0.6
589,898 - MPMX19_04241 0.86 -1.1
589,972 + -0.2
589,972 + -1.7
589,972 + +0.3
589,972 + -1.1
589,972 + +0.4
589,972 + +0.2
589,973 - +0.3
590,064 + MPMX19_04242 0.12 -0.2
590,064 + MPMX19_04242 0.12 +0.6
590,065 - MPMX19_04242 0.13 -1.7
590,202 + MPMX19_04242 0.44 -0.7
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 -1.1
590,202 + MPMX19_04242 0.44 -1.1
590,202 + MPMX19_04242 0.44 -0.4
590,202 + MPMX19_04242 0.44 -0.3
590,202 + MPMX19_04242 0.44 -0.6
590,202 + MPMX19_04242 0.44 -0.7
590,202 + MPMX19_04242 0.44 +0.3
590,202 + MPMX19_04242 0.44 -0.7
590,202 + MPMX19_04242 0.44 -0.7
590,202 + MPMX19_04242 0.44 -0.6
590,202 + MPMX19_04242 0.44 -0.5
590,202 + MPMX19_04242 0.44 -0.8
590,202 + MPMX19_04242 0.44 -0.2
590,202 + MPMX19_04242 0.44 -0.7
590,202 + MPMX19_04242 0.44 +1.3
590,202 + MPMX19_04242 0.44 -1.6
590,202 + MPMX19_04242 0.44 -0.8
590,202 + MPMX19_04242 0.44 -1.2
590,202 + MPMX19_04242 0.44 -1.7
590,202 + MPMX19_04242 0.44 -1.1
590,202 + MPMX19_04242 0.44 -0.1
590,202 + MPMX19_04242 0.44 +0.6
590,202 + MPMX19_04242 0.44 +0.9
590,202 + MPMX19_04242 0.44 -0.5
590,202 + MPMX19_04242 0.44 -0.1
590,203 - MPMX19_04242 0.45 +0.8
590,203 - MPMX19_04242 0.45 -0.0
590,203 - MPMX19_04242 0.45 -0.6
590,203 - MPMX19_04242 0.45 +0.2
590,203 - MPMX19_04242 0.45 +0.5
590,203 - MPMX19_04242 0.45 -0.2
590,203 - MPMX19_04242 0.45 -0.1
590,203 - MPMX19_04242 0.45 +0.3
590,203 - MPMX19_04242 0.45 -0.3
590,203 - MPMX19_04242 0.45 -0.4
590,203 - MPMX19_04242 0.45 -1.3
590,203 - MPMX19_04242 0.45 -2.6
590,203 - MPMX19_04242 0.45 -0.2
590,203 - MPMX19_04242 0.45 -2.7
590,203 - MPMX19_04242 0.45 +0.2
590,203 - MPMX19_04242 0.45 +0.2
590,203 - MPMX19_04242 0.45 +0.2
590,203 - MPMX19_04242 0.45 +1.3
590,203 - MPMX19_04242 0.45 -0.4
590,203 - MPMX19_04242 0.45 -1.6
590,203 - MPMX19_04242 0.45 -0.8
590,204 - MPMX19_04242 0.45 -0.9
590,283 - MPMX19_04242 0.63 +0.4
590,283 - MPMX19_04242 0.63 -2.3
590,400 + -2.2
590,401 - -1.6
590,437 + +0.4
590,437 + +1.3
590,437 + +0.8
590,437 + -1.1
590,437 + -0.4
590,437 + +0.0
590,437 + +0.1
590,437 + -0.4
590,437 + -2.2
590,437 + -1.6
590,437 + -0.3
590,437 + -0.2
590,437 + -0.2
590,437 + -1.2
590,437 + -0.2
590,438 - -0.6
590,438 - -0.6
590,438 - -1.2
590,438 - +0.8
590,438 - -1.2
590,438 - -0.2
590,438 - +0.3
590,840 + MPMX19_04243 0.52 +0.9
590,840 + MPMX19_04243 0.52 -1.0
590,840 + MPMX19_04243 0.52 +0.2
590,840 + MPMX19_04243 0.52 +0.3
590,841 - MPMX19_04243 0.52 +0.4
590,841 - MPMX19_04243 0.52 +0.4
590,841 - MPMX19_04243 0.52 -1.2
590,841 - MPMX19_04243 0.52 +0.2
590,841 - MPMX19_04243 0.52 -1.6
590,841 - MPMX19_04243 0.52 -1.0
590,841 - MPMX19_04243 0.52 +0.4
590,841 - MPMX19_04243 0.52 +0.4
590,841 - MPMX19_04243 0.52 -0.1
590,841 - MPMX19_04243 0.52 -1.9
590,841 - MPMX19_04243 0.52 +0.3
590,841 - MPMX19_04243 0.52 -0.1

Or see this region's nucleotide sequence