Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03753 and MPMX19_03754 are separated by 50 nucleotides MPMX19_03754 and MPMX19_03755 are separated by 106 nucleotides MPMX19_03755 and MPMX19_03756 are separated by 113 nucleotides MPMX19_03756 and MPMX19_03757 are separated by 201 nucleotides
MPMX19_03753: MPMX19_03753 - hypothetical protein, at 1,198,380 to 1,198,865
_03753
MPMX19_03754: MPMX19_03754 - hypothetical protein, at 1,198,916 to 1,199,449
_03754
MPMX19_03755: MPMX19_03755 - Copper transport protein YcnJ, at 1,199,556 to 1,201,259
_03755
MPMX19_03756: MPMX19_03756 - hypothetical protein, at 1,201,373 to 1,201,672
_03756
MPMX19_03757: MPMX19_03757 - D-ribose pyranase, at 1,201,874 to 1,202,293
_03757
Position (kb)
1199
1200
1201
1202 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1198.871 kb on + strand at 1198.871 kb on + strand at 1198.871 kb on + strand at 1198.872 kb on - strand at 1198.872 kb on - strand at 1198.872 kb on - strand at 1198.872 kb on - strand at 1198.872 kb on - strand at 1198.872 kb on - strand at 1198.872 kb on - strand at 1199.030 kb on + strand, within MPMX19_03754 at 1199.030 kb on + strand, within MPMX19_03754 at 1199.030 kb on + strand, within MPMX19_03754 at 1199.030 kb on + strand, within MPMX19_03754 at 1199.030 kb on + strand, within MPMX19_03754 at 1199.030 kb on + strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.031 kb on - strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.033 kb on + strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.034 kb on - strand, within MPMX19_03754 at 1199.171 kb on + strand, within MPMX19_03754 at 1199.172 kb on - strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.183 kb on + strand, within MPMX19_03754 at 1199.184 kb on - strand, within MPMX19_03754 at 1199.184 kb on - strand, within MPMX19_03754 at 1199.184 kb on - strand, within MPMX19_03754 at 1199.184 kb on - strand, within MPMX19_03754 at 1199.184 kb on - strand, within MPMX19_03754 at 1199.184 kb on - strand, within MPMX19_03754 at 1199.184 kb on - strand, within MPMX19_03754 at 1199.261 kb on + strand, within MPMX19_03754 at 1199.262 kb on - strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.318 kb on + strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.319 kb on - strand, within MPMX19_03754 at 1199.399 kb on + strand at 1199.529 kb on + strand at 1199.582 kb on + strand at 1199.583 kb on - strand at 1199.583 kb on - strand at 1199.583 kb on - strand at 1199.583 kb on - strand at 1199.781 kb on - strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.859 kb on + strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.860 kb on - strand, within MPMX19_03755 at 1199.872 kb on - strand, within MPMX19_03755 at 1200.021 kb on + strand, within MPMX19_03755 at 1200.021 kb on + strand, within MPMX19_03755 at 1200.021 kb on + strand, within MPMX19_03755 at 1200.021 kb on + strand, within MPMX19_03755 at 1200.021 kb on + strand, within MPMX19_03755 at 1200.022 kb on - strand, within MPMX19_03755 at 1200.022 kb on - strand, within MPMX19_03755 at 1200.022 kb on - strand, within MPMX19_03755 at 1200.022 kb on - strand, within MPMX19_03755 at 1200.022 kb on - strand, within MPMX19_03755 at 1200.022 kb on - strand, within MPMX19_03755 at 1200.639 kb on + strand, within MPMX19_03755 at 1200.640 kb on - strand, within MPMX19_03755 at 1200.650 kb on - strand, within MPMX19_03755 at 1201.007 kb on + strand, within MPMX19_03755 at 1201.257 kb on + strand at 1201.258 kb on - strand at 1201.258 kb on - strand at 1201.258 kb on - strand at 1201.469 kb on + strand, within MPMX19_03756 at 1201.469 kb on + strand, within MPMX19_03756 at 1201.470 kb on - strand, within MPMX19_03756 at 1201.470 kb on - strand, within MPMX19_03756 at 1201.508 kb on + strand, within MPMX19_03756 at 1201.508 kb on + strand, within MPMX19_03756 at 1201.661 kb on + strand at 1201.661 kb on + strand at 1201.661 kb on + strand at 1201.662 kb on - strand at 1201.662 kb on - strand at 1201.662 kb on - strand at 1201.662 kb on - strand at 1201.662 kb on - strand at 1201.708 kb on + strand at 1201.708 kb on + strand at 1201.708 kb on + strand at 1201.709 kb on - strand at 1201.709 kb on - strand at 1201.709 kb on - strand at 1201.755 kb on - strand at 1201.755 kb on - strand at 1201.755 kb on - strand at 1201.835 kb on + strand at 1201.836 kb on - strand at 1201.836 kb on - strand at 1201.836 kb on - strand at 1201.934 kb on - strand, within MPMX19_03757 at 1202.200 kb on + strand, within MPMX19_03757 at 1202.200 kb on + strand, within MPMX19_03757 at 1202.200 kb on + strand, within MPMX19_03757 at 1202.200 kb on + strand, within MPMX19_03757 at 1202.200 kb on + strand, within MPMX19_03757 at 1202.201 kb on - strand, within MPMX19_03757 at 1202.201 kb on - strand, within MPMX19_03757 at 1202.201 kb on - strand, within MPMX19_03757 at 1202.201 kb on - strand, within MPMX19_03757
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 1,198,871 + -0.4 1,198,871 + -0.7 1,198,871 + +0.3 1,198,872 - -1.1 1,198,872 - +0.4 1,198,872 - +0.4 1,198,872 - -1.4 1,198,872 - -0.8 1,198,872 - -0.2 1,198,872 - +0.5 1,199,030 + MPMX19_03754 0.21 -0.8 1,199,030 + MPMX19_03754 0.21 +1.3 1,199,030 + MPMX19_03754 0.21 -0.9 1,199,030 + MPMX19_03754 0.21 -0.9 1,199,030 + MPMX19_03754 0.21 +1.1 1,199,030 + MPMX19_03754 0.21 -1.1 1,199,031 - MPMX19_03754 0.22 +0.2 1,199,031 - MPMX19_03754 0.22 -1.1 1,199,031 - MPMX19_03754 0.22 -0.6 1,199,031 - MPMX19_03754 0.22 -0.1 1,199,031 - MPMX19_03754 0.22 +0.1 1,199,031 - MPMX19_03754 0.22 -0.7 1,199,031 - MPMX19_03754 0.22 +0.3 1,199,031 - MPMX19_03754 0.22 -0.7 1,199,031 - MPMX19_03754 0.22 -0.8 1,199,033 + MPMX19_03754 0.22 +0.0 1,199,033 + MPMX19_03754 0.22 -0.0 1,199,033 + MPMX19_03754 0.22 -0.3 1,199,033 + MPMX19_03754 0.22 +1.0 1,199,033 + MPMX19_03754 0.22 -0.5 1,199,033 + MPMX19_03754 0.22 -1.4 1,199,033 + MPMX19_03754 0.22 -1.0 1,199,033 + MPMX19_03754 0.22 +0.0 1,199,033 + MPMX19_03754 0.22 -0.7 1,199,033 + MPMX19_03754 0.22 +0.0 1,199,033 + MPMX19_03754 0.22 -0.5 1,199,033 + MPMX19_03754 0.22 -1.1 1,199,034 - MPMX19_03754 0.22 +0.3 1,199,034 - MPMX19_03754 0.22 +0.9 1,199,034 - MPMX19_03754 0.22 +0.1 1,199,034 - MPMX19_03754 0.22 -0.5 1,199,034 - MPMX19_03754 0.22 -1.7 1,199,034 - MPMX19_03754 0.22 +0.1 1,199,034 - MPMX19_03754 0.22 +2.3 1,199,034 - MPMX19_03754 0.22 -1.1 1,199,034 - MPMX19_03754 0.22 -0.2 1,199,034 - MPMX19_03754 0.22 -0.1 1,199,034 - MPMX19_03754 0.22 +0.7 1,199,171 + MPMX19_03754 0.48 -1.9 1,199,172 - MPMX19_03754 0.48 -0.9 1,199,183 + MPMX19_03754 0.50 -0.6 1,199,183 + MPMX19_03754 0.50 -0.1 1,199,183 + MPMX19_03754 0.50 +0.3 1,199,183 + MPMX19_03754 0.50 -1.2 1,199,183 + MPMX19_03754 0.50 +0.1 1,199,183 + MPMX19_03754 0.50 -0.2 1,199,183 + MPMX19_03754 0.50 +1.1 1,199,183 + MPMX19_03754 0.50 -0.1 1,199,183 + MPMX19_03754 0.50 +0.3 1,199,183 + MPMX19_03754 0.50 -0.3 1,199,183 + MPMX19_03754 0.50 -1.6 1,199,184 - MPMX19_03754 0.50 -0.1 1,199,184 - MPMX19_03754 0.50 -1.7 1,199,184 - MPMX19_03754 0.50 +1.7 1,199,184 - MPMX19_03754 0.50 +0.9 1,199,184 - MPMX19_03754 0.50 +0.7 1,199,184 - MPMX19_03754 0.50 -0.9 1,199,184 - MPMX19_03754 0.50 -1.3 1,199,261 + MPMX19_03754 0.65 -1.4 1,199,262 - MPMX19_03754 0.65 -1.0 1,199,318 + MPMX19_03754 0.75 +0.7 1,199,318 + MPMX19_03754 0.75 -0.4 1,199,318 + MPMX19_03754 0.75 -1.6 1,199,318 + MPMX19_03754 0.75 -1.1 1,199,318 + MPMX19_03754 0.75 +0.7 1,199,318 + MPMX19_03754 0.75 -0.2 1,199,318 + MPMX19_03754 0.75 -2.0 1,199,318 + MPMX19_03754 0.75 -0.7 1,199,318 + MPMX19_03754 0.75 -2.1 1,199,318 + MPMX19_03754 0.75 +0.7 1,199,318 + MPMX19_03754 0.75 -0.8 1,199,318 + MPMX19_03754 0.75 -0.6 1,199,318 + MPMX19_03754 0.75 -0.2 1,199,318 + MPMX19_03754 0.75 +0.1 1,199,319 - MPMX19_03754 0.75 -1.2 1,199,319 - MPMX19_03754 0.75 -0.3 1,199,319 - MPMX19_03754 0.75 -0.3 1,199,319 - MPMX19_03754 0.75 +0.5 1,199,319 - MPMX19_03754 0.75 +1.0 1,199,319 - MPMX19_03754 0.75 +1.5 1,199,319 - MPMX19_03754 0.75 -0.6 1,199,319 - MPMX19_03754 0.75 -0.2 1,199,319 - MPMX19_03754 0.75 -0.4 1,199,319 - MPMX19_03754 0.75 -1.4 1,199,319 - MPMX19_03754 0.75 -1.2 1,199,319 - MPMX19_03754 0.75 -1.3 1,199,399 + -0.0 1,199,529 + -0.7 1,199,582 + +1.4 1,199,583 - -0.6 1,199,583 - -0.8 1,199,583 - +0.1 1,199,583 - -1.7 1,199,781 - MPMX19_03755 0.13 -0.9 1,199,859 + MPMX19_03755 0.18 -1.3 1,199,859 + MPMX19_03755 0.18 +0.4 1,199,859 + MPMX19_03755 0.18 -0.4 1,199,859 + MPMX19_03755 0.18 -0.4 1,199,859 + MPMX19_03755 0.18 +0.9 1,199,859 + MPMX19_03755 0.18 -0.3 1,199,859 + MPMX19_03755 0.18 -0.4 1,199,859 + MPMX19_03755 0.18 +0.9 1,199,859 + MPMX19_03755 0.18 +0.6 1,199,859 + MPMX19_03755 0.18 -0.0 1,199,859 + MPMX19_03755 0.18 -0.3 1,199,859 + MPMX19_03755 0.18 -0.7 1,199,859 + MPMX19_03755 0.18 -0.6 1,199,859 + MPMX19_03755 0.18 +1.3 1,199,859 + MPMX19_03755 0.18 -1.7 1,199,859 + MPMX19_03755 0.18 -1.1 1,199,859 + MPMX19_03755 0.18 +1.2 1,199,859 + MPMX19_03755 0.18 -0.3 1,199,860 - MPMX19_03755 0.18 -1.4 1,199,860 - MPMX19_03755 0.18 +0.9 1,199,860 - MPMX19_03755 0.18 -1.1 1,199,860 - MPMX19_03755 0.18 -0.1 1,199,860 - MPMX19_03755 0.18 +0.6 1,199,860 - MPMX19_03755 0.18 -0.3 1,199,860 - MPMX19_03755 0.18 -0.8 1,199,860 - MPMX19_03755 0.18 +0.2 1,199,860 - MPMX19_03755 0.18 +0.7 1,199,860 - MPMX19_03755 0.18 -2.4 1,199,860 - MPMX19_03755 0.18 -0.1 1,199,860 - MPMX19_03755 0.18 +1.4 1,199,860 - MPMX19_03755 0.18 -0.3 1,199,860 - MPMX19_03755 0.18 -0.0 1,199,860 - MPMX19_03755 0.18 +0.1 1,199,860 - MPMX19_03755 0.18 -1.1 1,199,860 - MPMX19_03755 0.18 +1.1 1,199,872 - MPMX19_03755 0.19 -0.1 1,200,021 + MPMX19_03755 0.27 -0.8 1,200,021 + MPMX19_03755 0.27 -0.9 1,200,021 + MPMX19_03755 0.27 +0.2 1,200,021 + MPMX19_03755 0.27 -2.1 1,200,021 + MPMX19_03755 0.27 -1.5 1,200,022 - MPMX19_03755 0.27 +0.3 1,200,022 - MPMX19_03755 0.27 +1.3 1,200,022 - MPMX19_03755 0.27 +0.7 1,200,022 - MPMX19_03755 0.27 -0.1 1,200,022 - MPMX19_03755 0.27 +1.3 1,200,022 - MPMX19_03755 0.27 -2.3 1,200,639 + MPMX19_03755 0.64 -1.0 1,200,640 - MPMX19_03755 0.64 -1.2 1,200,650 - MPMX19_03755 0.64 -1.0 1,201,007 + MPMX19_03755 0.85 -0.3 1,201,257 + -1.1 1,201,258 - +0.1 1,201,258 - +0.7 1,201,258 - +0.0 1,201,469 + MPMX19_03756 0.32 -0.6 1,201,469 + MPMX19_03756 0.32 +0.2 1,201,470 - MPMX19_03756 0.32 -0.3 1,201,470 - MPMX19_03756 0.32 -1.9 1,201,508 + MPMX19_03756 0.45 -1.4 1,201,508 + MPMX19_03756 0.45 -0.9 1,201,661 + -1.4 1,201,661 + -1.1 1,201,661 + -1.7 1,201,662 - -1.7 1,201,662 - -0.1 1,201,662 - -1.0 1,201,662 - -0.2 1,201,662 - +0.7 1,201,708 + -0.4 1,201,708 + +0.6 1,201,708 + -2.1 1,201,709 - -0.6 1,201,709 - -0.3 1,201,709 - +0.6 1,201,755 - +0.9 1,201,755 - -1.0 1,201,755 - +0.9 1,201,835 + -0.3 1,201,836 - -0.3 1,201,836 - +0.1 1,201,836 - -0.8 1,201,934 - MPMX19_03757 0.14 +0.3 1,202,200 + MPMX19_03757 0.78 -1.6 1,202,200 + MPMX19_03757 0.78 +0.1 1,202,200 + MPMX19_03757 0.78 +1.5 1,202,200 + MPMX19_03757 0.78 +0.7 1,202,200 + MPMX19_03757 0.78 -2.2 1,202,201 - MPMX19_03757 0.78 -0.4 1,202,201 - MPMX19_03757 0.78 -0.3 1,202,201 - MPMX19_03757 0.78 +0.6 1,202,201 - MPMX19_03757 0.78 +0.5
Or see this region's nucleotide sequence