Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03379 and MPMX19_03380 are separated by 104 nucleotides MPMX19_03380 and MPMX19_03381 overlap by 11 nucleotides MPMX19_03381 and MPMX19_03382 are separated by 9 nucleotides
MPMX19_03379: MPMX19_03379 - Periplasmic protein TorT, at 763,484 to 764,560
_03379
MPMX19_03380: MPMX19_03380 - 5-oxoprolinase subunit C, at 764,665 to 765,636
_03380
MPMX19_03381: MPMX19_03381 - 5-oxoprolinase subunit B, at 765,626 to 766,501
_03381
MPMX19_03382: MPMX19_03382 - Biotin carboxylase, at 766,511 to 767,890
_03382
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 763.707 kb on + strand, within MPMX19_03379 at 763.708 kb on - strand, within MPMX19_03379 at 763.708 kb on - strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 764.034 kb on + strand, within MPMX19_03379 at 764.035 kb on - strand, within MPMX19_03379 at 764.259 kb on + strand, within MPMX19_03379 at 764.259 kb on + strand, within MPMX19_03379 at 764.322 kb on + strand, within MPMX19_03379 at 764.323 kb on - strand, within MPMX19_03379 at 764.323 kb on - strand, within MPMX19_03379 at 764.323 kb on - strand, within MPMX19_03379 at 764.340 kb on + strand, within MPMX19_03379 at 764.341 kb on - strand, within MPMX19_03379 at 764.409 kb on + strand, within MPMX19_03379 at 764.409 kb on + strand, within MPMX19_03379 at 764.409 kb on + strand, within MPMX19_03379 at 764.410 kb on - strand, within MPMX19_03379 at 764.607 kb on + strand at 764.608 kb on - strand at 764.616 kb on + strand at 764.616 kb on + strand at 764.616 kb on + strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.825 kb on + strand, within MPMX19_03380 at 764.826 kb on - strand, within MPMX19_03380 at 764.898 kb on - strand, within MPMX19_03380 at 764.903 kb on + strand, within MPMX19_03380 at 764.903 kb on + strand, within MPMX19_03380 at 764.904 kb on - strand, within MPMX19_03380 at 764.904 kb on - strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.971 kb on - strand, within MPMX19_03380 at 764.971 kb on - strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.081 kb on - strand, within MPMX19_03380 at 765.091 kb on + strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.299 kb on + strand, within MPMX19_03380 at 765.300 kb on - strand, within MPMX19_03380 at 765.300 kb on - strand, within MPMX19_03380 at 765.323 kb on + strand, within MPMX19_03380 at 765.323 kb on + strand, within MPMX19_03380 at 765.323 kb on + strand, within MPMX19_03380 at 765.530 kb on + strand, within MPMX19_03380 at 765.572 kb on + strand at 765.573 kb on - strand at 765.573 kb on - strand at 765.573 kb on - strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.628 kb on - strand at 765.628 kb on - strand at 765.628 kb on - strand at 765.628 kb on - strand at 765.703 kb on + strand at 765.703 kb on + strand at 765.703 kb on + strand at 765.704 kb on - strand at 765.704 kb on - strand at 765.704 kb on - strand at 765.762 kb on + strand, within MPMX19_03381 at 765.762 kb on + strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.891 kb on + strand, within MPMX19_03381 at 765.916 kb on - strand, within MPMX19_03381 at 765.916 kb on - strand, within MPMX19_03381 at 765.981 kb on + strand, within MPMX19_03381 at 765.982 kb on - strand, within MPMX19_03381 at 765.982 kb on - strand, within MPMX19_03381 at 765.982 kb on - strand, within MPMX19_03381 at 766.023 kb on + strand, within MPMX19_03381 at 766.024 kb on - strand, within MPMX19_03381 at 766.024 kb on - strand, within MPMX19_03381 at 766.113 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.135 kb on - strand, within MPMX19_03381 at 766.135 kb on - strand, within MPMX19_03381 at 766.135 kb on - strand, within MPMX19_03381 at 766.212 kb on + strand, within MPMX19_03381 at 766.213 kb on - strand, within MPMX19_03381 at 766.215 kb on + strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.382 kb on - strand, within MPMX19_03381 at 766.382 kb on - strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.482 kb on + strand at 766.482 kb on + strand at 766.482 kb on + strand at 766.483 kb on - strand at 766.483 kb on - strand at 766.512 kb on + strand at 766.512 kb on + strand at 766.512 kb on + strand at 766.513 kb on - strand at 766.513 kb on - strand at 766.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 763,707 + MPMX19_03379 0.21 -0.5 763,708 - MPMX19_03379 0.21 +0.2 763,708 - MPMX19_03379 0.21 +0.5 763,725 + MPMX19_03379 0.22 -0.0 763,725 + MPMX19_03379 0.22 -0.1 763,725 + MPMX19_03379 0.22 +1.1 763,725 + MPMX19_03379 0.22 +1.7 763,726 - MPMX19_03379 0.22 -1.5 763,726 - MPMX19_03379 0.22 -0.6 763,726 - MPMX19_03379 0.22 -1.3 763,726 - MPMX19_03379 0.22 -0.9 763,726 - MPMX19_03379 0.22 -0.4 763,726 - MPMX19_03379 0.22 -1.6 763,726 - MPMX19_03379 0.22 +0.4 763,726 - MPMX19_03379 0.22 +0.4 763,726 - MPMX19_03379 0.22 -1.1 763,726 - MPMX19_03379 0.22 +0.6 763,726 - MPMX19_03379 0.22 -0.6 763,726 - MPMX19_03379 0.22 +0.4 763,815 + MPMX19_03379 0.31 -0.6 763,815 + MPMX19_03379 0.31 +0.3 763,815 + MPMX19_03379 0.31 +0.4 763,815 + MPMX19_03379 0.31 -1.4 763,815 + MPMX19_03379 0.31 +0.3 763,815 + MPMX19_03379 0.31 -0.0 763,815 + MPMX19_03379 0.31 -1.1 763,815 + MPMX19_03379 0.31 -1.6 763,815 + MPMX19_03379 0.31 -0.4 763,816 - MPMX19_03379 0.31 -0.8 763,816 - MPMX19_03379 0.31 +0.3 763,816 - MPMX19_03379 0.31 -2.9 763,816 - MPMX19_03379 0.31 -1.2 763,816 - MPMX19_03379 0.31 -1.3 763,816 - MPMX19_03379 0.31 +0.4 763,816 - MPMX19_03379 0.31 +0.7 763,816 - MPMX19_03379 0.31 -0.3 763,816 - MPMX19_03379 0.31 +0.5 763,816 - MPMX19_03379 0.31 -1.7 764,034 + MPMX19_03379 0.51 -0.9 764,035 - MPMX19_03379 0.51 -1.7 764,259 + MPMX19_03379 0.72 -0.6 764,259 + MPMX19_03379 0.72 -1.7 764,322 + MPMX19_03379 0.78 -0.6 764,323 - MPMX19_03379 0.78 +0.3 764,323 - MPMX19_03379 0.78 -0.3 764,323 - MPMX19_03379 0.78 -0.3 764,340 + MPMX19_03379 0.79 +1.0 764,341 - MPMX19_03379 0.80 -0.8 764,409 + MPMX19_03379 0.86 -0.9 764,409 + MPMX19_03379 0.86 -0.6 764,409 + MPMX19_03379 0.86 +0.0 764,410 - MPMX19_03379 0.86 -1.7 764,607 + -0.0 764,608 - -1.1 764,616 + +0.5 764,616 + +0.5 764,616 + -1.1 764,617 - -0.2 764,617 - -0.2 764,617 - -0.5 764,617 - -0.0 764,617 - -2.0 764,617 - +0.1 764,617 - -0.0 764,617 - -0.6 764,617 - +1.1 764,617 - -0.4 764,618 + -0.5 764,618 + +0.1 764,618 + -0.2 764,618 + -1.2 764,618 + -0.9 764,618 + -1.7 764,618 + +1.7 764,618 + -0.5 764,619 - -0.3 764,619 - +0.1 764,619 - -1.5 764,619 - -2.6 764,619 - +0.4 764,825 + MPMX19_03380 0.16 -1.1 764,826 - MPMX19_03380 0.17 -1.4 764,898 - MPMX19_03380 0.24 -0.6 764,903 + MPMX19_03380 0.24 +0.4 764,903 + MPMX19_03380 0.24 -0.0 764,904 - MPMX19_03380 0.25 +0.3 764,904 - MPMX19_03380 0.25 -0.2 764,970 + MPMX19_03380 0.31 -2.3 764,970 + MPMX19_03380 0.31 -0.5 764,970 + MPMX19_03380 0.31 -0.1 764,970 + MPMX19_03380 0.31 -0.1 764,970 + MPMX19_03380 0.31 +0.7 764,971 - MPMX19_03380 0.31 -0.9 764,971 - MPMX19_03380 0.31 -0.7 765,080 + MPMX19_03380 0.43 +1.7 765,080 + MPMX19_03380 0.43 -0.2 765,080 + MPMX19_03380 0.43 +0.7 765,080 + MPMX19_03380 0.43 +0.1 765,080 + MPMX19_03380 0.43 -0.5 765,080 + MPMX19_03380 0.43 +0.4 765,081 - MPMX19_03380 0.43 -0.7 765,091 + MPMX19_03380 0.44 -0.0 765,092 - MPMX19_03380 0.44 +0.2 765,092 - MPMX19_03380 0.44 -0.7 765,092 - MPMX19_03380 0.44 -1.9 765,092 - MPMX19_03380 0.44 +0.0 765,242 + MPMX19_03380 0.59 -0.4 765,242 + MPMX19_03380 0.59 +0.6 765,242 + MPMX19_03380 0.59 +0.7 765,242 + MPMX19_03380 0.59 +0.6 765,242 + MPMX19_03380 0.59 +0.9 765,242 + MPMX19_03380 0.59 +0.3 765,242 + MPMX19_03380 0.59 +0.1 765,242 + MPMX19_03380 0.59 +0.9 765,242 + MPMX19_03380 0.59 -2.2 765,242 + MPMX19_03380 0.59 +1.0 765,242 + MPMX19_03380 0.59 +1.8 765,242 + MPMX19_03380 0.59 +0.5 765,242 + MPMX19_03380 0.59 +0.0 765,243 - MPMX19_03380 0.59 +0.9 765,243 - MPMX19_03380 0.59 -0.2 765,243 - MPMX19_03380 0.59 +0.4 765,243 - MPMX19_03380 0.59 -0.8 765,243 - MPMX19_03380 0.59 -0.7 765,243 - MPMX19_03380 0.59 -0.1 765,243 - MPMX19_03380 0.59 -0.4 765,243 - MPMX19_03380 0.59 -1.1 765,243 - MPMX19_03380 0.59 -0.7 765,243 - MPMX19_03380 0.59 -0.9 765,243 - MPMX19_03380 0.59 -0.6 765,243 - MPMX19_03380 0.59 -0.3 765,299 + MPMX19_03380 0.65 +0.6 765,300 - MPMX19_03380 0.65 -0.0 765,300 - MPMX19_03380 0.65 +0.7 765,323 + MPMX19_03380 0.68 +1.1 765,323 + MPMX19_03380 0.68 -2.0 765,323 + MPMX19_03380 0.68 -0.3 765,530 + MPMX19_03380 0.89 -0.6 765,572 + -0.0 765,573 - -1.1 765,573 - -0.2 765,573 - +0.7 765,627 + +0.0 765,627 + -1.3 765,627 + +0.3 765,627 + -0.4 765,627 + -0.6 765,627 + -1.4 765,627 + +0.9 765,628 - -0.0 765,628 - -0.5 765,628 - +0.6 765,628 - -0.7 765,703 + -0.4 765,703 + +0.3 765,703 + -0.1 765,704 - -0.1 765,704 - -1.1 765,704 - -0.1 765,762 + MPMX19_03381 0.16 -1.3 765,762 + MPMX19_03381 0.16 +1.7 765,763 - MPMX19_03381 0.16 -0.3 765,763 - MPMX19_03381 0.16 -1.0 765,763 - MPMX19_03381 0.16 +0.3 765,763 - MPMX19_03381 0.16 -1.4 765,858 + MPMX19_03381 0.26 -0.7 765,858 + MPMX19_03381 0.26 -2.4 765,858 + MPMX19_03381 0.26 -0.7 765,858 + MPMX19_03381 0.26 -0.7 765,858 + MPMX19_03381 0.26 -1.9 765,859 - MPMX19_03381 0.27 -0.1 765,859 - MPMX19_03381 0.27 +0.7 765,859 - MPMX19_03381 0.27 -0.5 765,859 - MPMX19_03381 0.27 +1.2 765,859 - MPMX19_03381 0.27 -0.1 765,859 - MPMX19_03381 0.27 -1.0 765,891 + MPMX19_03381 0.30 -0.7 765,916 - MPMX19_03381 0.33 +0.3 765,916 - MPMX19_03381 0.33 -0.7 765,981 + MPMX19_03381 0.41 -0.4 765,982 - MPMX19_03381 0.41 +0.0 765,982 - MPMX19_03381 0.41 +0.2 765,982 - MPMX19_03381 0.41 -0.1 766,023 + MPMX19_03381 0.45 -0.7 766,024 - MPMX19_03381 0.45 -0.9 766,024 - MPMX19_03381 0.45 -0.9 766,113 + MPMX19_03381 0.56 -0.6 766,134 + MPMX19_03381 0.58 +1.1 766,134 + MPMX19_03381 0.58 -1.3 766,134 + MPMX19_03381 0.58 -0.9 766,134 + MPMX19_03381 0.58 -1.1 766,134 + MPMX19_03381 0.58 -0.4 766,134 + MPMX19_03381 0.58 +0.5 766,135 - MPMX19_03381 0.58 +0.3 766,135 - MPMX19_03381 0.58 -1.4 766,135 - MPMX19_03381 0.58 +1.0 766,212 + MPMX19_03381 0.67 -1.2 766,213 - MPMX19_03381 0.67 +0.3 766,215 + MPMX19_03381 0.67 -0.0 766,216 - MPMX19_03381 0.67 -0.3 766,216 - MPMX19_03381 0.67 -0.6 766,216 - MPMX19_03381 0.67 -0.6 766,216 - MPMX19_03381 0.67 -1.6 766,382 - MPMX19_03381 0.86 -0.9 766,382 - MPMX19_03381 0.86 +0.1 766,383 + MPMX19_03381 0.86 -1.9 766,383 + MPMX19_03381 0.86 -0.1 766,383 + MPMX19_03381 0.86 -0.5 766,383 + MPMX19_03381 0.86 -0.6 766,383 + MPMX19_03381 0.86 -0.2 766,383 + MPMX19_03381 0.86 -1.7 766,384 - MPMX19_03381 0.87 +0.5 766,384 - MPMX19_03381 0.87 -2.1 766,384 - MPMX19_03381 0.87 -0.4 766,384 - MPMX19_03381 0.87 -0.7 766,384 - MPMX19_03381 0.87 -1.3 766,384 - MPMX19_03381 0.87 +0.1 766,482 + -0.6 766,482 + -0.1 766,482 + +0.7 766,483 - -0.1 766,483 - +0.4 766,512 + -0.8 766,512 + +0.4 766,512 + -0.7 766,513 - -0.7 766,513 - -0.2 766,513 - -0.3
Or see this region's nucleotide sequence