Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03116

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03115 and MPMX19_03116 are separated by 50 nucleotidesMPMX19_03116 and MPMX19_03117 are separated by 141 nucleotides MPMX19_03115: MPMX19_03115 - hypothetical protein, at 400,174 to 401,337 _03115 MPMX19_03116: MPMX19_03116 - Vitamin B12 import ATP-binding protein BtuD, at 401,388 to 402,500 _03116 MPMX19_03117: MPMX19_03117 - Catabolite control protein A, at 402,642 to 403,649 _03117 Position (kb) 401 402 403Strain fitness (log2 ratio) -2 -1 0 1at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.689 kb on - strand, within MPMX19_03115at 400.784 kb on + strand, within MPMX19_03115at 400.784 kb on + strand, within MPMX19_03115at 400.785 kb on - strand, within MPMX19_03115at 400.785 kb on - strand, within MPMX19_03115at 400.832 kb on + strand, within MPMX19_03115at 400.832 kb on + strand, within MPMX19_03115at 400.833 kb on - strand, within MPMX19_03115at 400.833 kb on - strand, within MPMX19_03115at 400.868 kb on + strand, within MPMX19_03115at 400.869 kb on - strand, within MPMX19_03115at 400.869 kb on - strand, within MPMX19_03115at 400.869 kb on - strand, within MPMX19_03115at 400.907 kb on + strand, within MPMX19_03115at 400.908 kb on - strand, within MPMX19_03115at 400.908 kb on - strand, within MPMX19_03115at 400.908 kb on - strand, within MPMX19_03115at 400.985 kb on + strand, within MPMX19_03115at 400.985 kb on + strand, within MPMX19_03115at 400.986 kb on - strand, within MPMX19_03115at 400.986 kb on - strand, within MPMX19_03115at 401.099 kb on + strand, within MPMX19_03115at 401.099 kb on + strand, within MPMX19_03115at 401.189 kb on + strand, within MPMX19_03115at 401.189 kb on + strand, within MPMX19_03115at 401.189 kb on + strand, within MPMX19_03115at 401.190 kb on - strand, within MPMX19_03115at 401.201 kb on + strand, within MPMX19_03115at 401.202 kb on - strand, within MPMX19_03115at 401.202 kb on - strand, within MPMX19_03115at 401.836 kb on + strand, within MPMX19_03116at 401.836 kb on + strand, within MPMX19_03116at 402.209 kb on - strand, within MPMX19_03116at 402.209 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.463 kb on + strandat 402.464 kb on - strandat 402.464 kb on - strandat 402.464 kb on - strandat 402.475 kb on - strandat 402.475 kb on - strandat 402.575 kb on + strandat 402.575 kb on + strandat 402.575 kb on + strandat 402.576 kb on - strandat 402.576 kb on - strandat 402.576 kb on - strandat 402.576 kb on - strandat 402.633 kb on + strandat 402.633 kb on + strandat 402.979 kb on + strand, within MPMX19_03117at 402.979 kb on + strand, within MPMX19_03117at 402.979 kb on + strand, within MPMX19_03117at 402.979 kb on + strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.980 kb on - strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.985 kb on + strand, within MPMX19_03117at 402.986 kb on - strand, within MPMX19_03117at 402.986 kb on - strand, within MPMX19_03117at 403.093 kb on + strand, within MPMX19_03117at 403.294 kb on + strand, within MPMX19_03117at 403.294 kb on + strand, within MPMX19_03117at 403.294 kb on + strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.295 kb on - strand, within MPMX19_03117at 403.405 kb on + strand, within MPMX19_03117at 403.405 kb on + strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117at 403.406 kb on - strand, within MPMX19_03117

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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400,451 + MPMX19_03115 0.24 +0.7
400,451 + MPMX19_03115 0.24 +0.1
400,451 + MPMX19_03115 0.24 +0.0
400,451 + MPMX19_03115 0.24 -0.4
400,451 + MPMX19_03115 0.24 +0.7
400,451 + MPMX19_03115 0.24 -0.7
400,451 + MPMX19_03115 0.24 +0.2
400,451 + MPMX19_03115 0.24 -0.7
400,452 - MPMX19_03115 0.24 -1.1
400,452 - MPMX19_03115 0.24 -1.8
400,452 - MPMX19_03115 0.24 -1.2
400,452 - MPMX19_03115 0.24 -0.7
400,452 - MPMX19_03115 0.24 -0.5
400,452 - MPMX19_03115 0.24 +0.9
400,452 - MPMX19_03115 0.24 -0.9
400,454 + MPMX19_03115 0.24 -2.3
400,454 + MPMX19_03115 0.24 -0.7
400,454 + MPMX19_03115 0.24 -0.5
400,454 + MPMX19_03115 0.24 -1.0
400,454 + MPMX19_03115 0.24 +0.0
400,454 + MPMX19_03115 0.24 +0.8
400,454 + MPMX19_03115 0.24 +1.0
400,454 + MPMX19_03115 0.24 -0.7
400,455 - MPMX19_03115 0.24 +0.5
400,455 - MPMX19_03115 0.24 -1.5
400,455 - MPMX19_03115 0.24 +0.2
400,455 - MPMX19_03115 0.24 -0.3
400,455 - MPMX19_03115 0.24 -0.3
400,455 - MPMX19_03115 0.24 -0.1
400,535 + MPMX19_03115 0.31 -0.4
400,535 + MPMX19_03115 0.31 -0.1
400,535 + MPMX19_03115 0.31 -0.3
400,535 + MPMX19_03115 0.31 -1.3
400,535 + MPMX19_03115 0.31 -0.6
400,536 - MPMX19_03115 0.31 -0.8
400,536 - MPMX19_03115 0.31 -0.4
400,536 - MPMX19_03115 0.31 +0.7
400,536 - MPMX19_03115 0.31 -2.0
400,536 - MPMX19_03115 0.31 -0.7
400,536 - MPMX19_03115 0.31 -0.5
400,536 - MPMX19_03115 0.31 +0.9
400,536 - MPMX19_03115 0.31 -1.6
400,689 - MPMX19_03115 0.44 +0.2
400,784 + MPMX19_03115 0.52 +0.1
400,784 + MPMX19_03115 0.52 -0.2
400,785 - MPMX19_03115 0.52 -1.3
400,785 - MPMX19_03115 0.52 -2.4
400,832 + MPMX19_03115 0.57 +1.5
400,832 + MPMX19_03115 0.57 -0.7
400,833 - MPMX19_03115 0.57 +0.4
400,833 - MPMX19_03115 0.57 -0.3
400,868 + MPMX19_03115 0.60 -0.8
400,869 - MPMX19_03115 0.60 -1.4
400,869 - MPMX19_03115 0.60 +0.6
400,869 - MPMX19_03115 0.60 +0.0
400,907 + MPMX19_03115 0.63 +0.6
400,908 - MPMX19_03115 0.63 -0.4
400,908 - MPMX19_03115 0.63 -0.1
400,908 - MPMX19_03115 0.63 -0.3
400,985 + MPMX19_03115 0.70 -0.4
400,985 + MPMX19_03115 0.70 -0.3
400,986 - MPMX19_03115 0.70 -1.5
400,986 - MPMX19_03115 0.70 -0.5
401,099 + MPMX19_03115 0.79 -0.6
401,099 + MPMX19_03115 0.79 -0.2
401,189 + MPMX19_03115 0.87 +0.2
401,189 + MPMX19_03115 0.87 +0.5
401,189 + MPMX19_03115 0.87 +0.6
401,190 - MPMX19_03115 0.87 +0.0
401,201 + MPMX19_03115 0.88 -0.8
401,202 - MPMX19_03115 0.88 -1.3
401,202 - MPMX19_03115 0.88 +0.2
401,836 + MPMX19_03116 0.40 +0.4
401,836 + MPMX19_03116 0.40 -1.1
402,209 - MPMX19_03116 0.74 +0.3
402,209 - MPMX19_03116 0.74 -1.6
402,251 - MPMX19_03116 0.78 +0.6
402,251 - MPMX19_03116 0.78 -0.6
402,251 - MPMX19_03116 0.78 -1.1
402,251 - MPMX19_03116 0.78 -1.5
402,251 - MPMX19_03116 0.78 -2.3
402,251 - MPMX19_03116 0.78 -1.9
402,251 - MPMX19_03116 0.78 -1.7
402,463 + -1.1
402,463 + +0.6
402,463 + -1.5
402,463 + -0.1
402,463 + -0.3
402,463 + -0.2
402,464 - -0.3
402,464 - -0.4
402,464 - +0.2
402,475 - +1.3
402,475 - -1.0
402,575 + +0.2
402,575 + -1.6
402,575 + -0.8
402,576 - -1.3
402,576 - +0.2
402,576 - +0.9
402,576 - -0.8
402,633 + -0.1
402,633 + -0.3
402,979 + MPMX19_03117 0.33 +0.4
402,979 + MPMX19_03117 0.33 +0.7
402,979 + MPMX19_03117 0.33 -0.8
402,979 + MPMX19_03117 0.33 +0.2
402,980 - MPMX19_03117 0.34 +0.6
402,980 - MPMX19_03117 0.34 -1.5
402,980 - MPMX19_03117 0.34 -0.6
402,980 - MPMX19_03117 0.34 +0.6
402,985 + MPMX19_03117 0.34 -0.5
402,985 + MPMX19_03117 0.34 -0.3
402,985 + MPMX19_03117 0.34 -1.0
402,985 + MPMX19_03117 0.34 -0.5
402,986 - MPMX19_03117 0.34 +0.4
402,986 - MPMX19_03117 0.34 -0.7
403,093 + MPMX19_03117 0.45 -0.4
403,294 + MPMX19_03117 0.65 -1.0
403,294 + MPMX19_03117 0.65 -0.3
403,294 + MPMX19_03117 0.65 +0.0
403,295 - MPMX19_03117 0.65 +0.5
403,295 - MPMX19_03117 0.65 -2.1
403,295 - MPMX19_03117 0.65 +0.4
403,295 - MPMX19_03117 0.65 +0.5
403,405 + MPMX19_03117 0.76 -0.0
403,405 + MPMX19_03117 0.76 +0.5
403,406 - MPMX19_03117 0.76 -0.4
403,406 - MPMX19_03117 0.76 -0.4
403,406 - MPMX19_03117 0.76 -0.7
403,406 - MPMX19_03117 0.76 -0.3
403,406 - MPMX19_03117 0.76 -0.4
403,406 - MPMX19_03117 0.76 +0.3
403,406 - MPMX19_03117 0.76 -0.1
403,406 - MPMX19_03117 0.76 -2.0

Or see this region's nucleotide sequence