Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF915 and GFF916 are separated by 141 nucleotides GFF916 and GFF917 are separated by 36 nucleotides GFF917 and GFF918 are separated by 153 nucleotides
GFF915 - Glucosyl-3-phosphoglycerate phosphatase, at 985,936 to 986,523
GFF915
GFF916 - hypothetical protein, at 986,665 to 987,417
GFF916
GFF917 - hypothetical protein, at 987,454 to 988,782
GFF917
GFF918 - Chorismate synthase, at 988,936 to 990,051
GFF918
Position (kb) 987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 986.454 kb on + strand, within GFF915 at 986.486 kb on - strand at 986.752 kb on + strand, within GFF916 at 986.752 kb on + strand, within GFF916 at 986.752 kb on + strand, within GFF916 at 986.753 kb on - strand, within GFF916 at 986.753 kb on - strand, within GFF916 at 986.753 kb on - strand, within GFF916 at 987.187 kb on + strand, within GFF916 at 987.188 kb on - strand, within GFF916 at 987.339 kb on - strand, within GFF916 at 987.361 kb on - strand at 987.380 kb on - strand at 987.567 kb on + strand at 987.690 kb on + strand, within GFF917 at 987.708 kb on - strand, within GFF917 at 987.708 kb on - strand, within GFF917 at 987.708 kb on - strand, within GFF917 at 987.938 kb on + strand, within GFF917 at 987.939 kb on - strand, within GFF917 at 987.939 kb on - strand, within GFF917 at 987.939 kb on - strand, within GFF917 at 988.098 kb on + strand, within GFF917 at 988.098 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.445 kb on + strand, within GFF917 at 988.446 kb on - strand, within GFF917 at 988.446 kb on - strand, within GFF917 at 988.446 kb on - strand, within GFF917 at 988.446 kb on - strand, within GFF917 at 988.446 kb on - strand, within GFF917 at 988.470 kb on + strand, within GFF917 at 988.470 kb on + strand, within GFF917 at 988.470 kb on + strand, within GFF917 at 988.470 kb on + strand, within GFF917 at 988.470 kb on + strand, within GFF917
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 986,454 + GFF915 0.88 +0.0 986,486 - +0.8 986,752 + GFF916 0.12 -0.0 986,752 + GFF916 0.12 +1.1 986,752 + GFF916 0.12 -0.4 986,753 - GFF916 0.12 +0.4 986,753 - GFF916 0.12 +0.1 986,753 - GFF916 0.12 -0.1 987,187 + GFF916 0.69 +1.1 987,188 - GFF916 0.69 -0.1 987,339 - GFF916 0.90 +0.4 987,361 - +0.6 987,380 - -0.4 987,567 + -2.7 987,690 + GFF917 0.18 -0.3 987,708 - GFF917 0.19 -0.3 987,708 - GFF917 0.19 -0.4 987,708 - GFF917 0.19 -0.8 987,938 + GFF917 0.36 -1.7 987,939 - GFF917 0.36 -2.2 987,939 - GFF917 0.36 -1.5 987,939 - GFF917 0.36 +0.4 988,098 + GFF917 0.48 -3.0 988,098 + GFF917 0.48 -0.2 988,445 + GFF917 0.75 -0.5 988,445 + GFF917 0.75 -3.3 988,445 + GFF917 0.75 -0.3 988,445 + GFF917 0.75 -3.3 988,445 + GFF917 0.75 -1.3 988,445 + GFF917 0.75 -1.6 988,445 + GFF917 0.75 -1.8 988,445 + GFF917 0.75 -2.1 988,445 + GFF917 0.75 -2.0 988,446 - GFF917 0.75 -1.0 988,446 - GFF917 0.75 -2.1 988,446 - GFF917 0.75 -2.0 988,446 - GFF917 0.75 -0.4 988,446 - GFF917 0.75 -0.4 988,470 + GFF917 0.76 -1.5 988,470 + GFF917 0.76 +0.1 988,470 + GFF917 0.76 -1.0 988,470 + GFF917 0.76 -1.3 988,470 + GFF917 0.76 +0.6
Or see this region's nucleotide sequence