Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF898 and GFF899 are separated by 505 nucleotides GFF899 and GFF900 are separated by 88 nucleotides
GFF898 - Urease accessory protein UreF, at 967,069 to 968,046
GFF898
GFF899 - DNA protection during starvation protein 1, at 968,552 to 969,091
GFF899
GFF900 - Urease subunit alpha 1, at 969,180 to 970,892
GFF900
Position (kb) 968
969
970 Strain fitness (log2 ratio) -1
0
1
2 at 967.679 kb on + strand, within GFF898 at 967.679 kb on + strand, within GFF898 at 967.679 kb on + strand, within GFF898 at 967.680 kb on - strand, within GFF898 at 967.686 kb on - strand, within GFF898 at 967.686 kb on - strand, within GFF898 at 967.686 kb on - strand, within GFF898 at 968.064 kb on + strand at 968.065 kb on - strand at 968.065 kb on - strand at 968.153 kb on + strand at 968.160 kb on + strand at 968.161 kb on - strand at 968.161 kb on - strand at 968.494 kb on + strand at 968.501 kb on + strand at 968.502 kb on - strand at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.626 kb on - strand, within GFF899 at 968.626 kb on - strand, within GFF899 at 968.754 kb on + strand, within GFF899 at 968.754 kb on + strand, within GFF899 at 968.755 kb on - strand, within GFF899 at 968.755 kb on - strand, within GFF899 at 968.860 kb on + strand, within GFF899 at 968.860 kb on + strand, within GFF899 at 968.901 kb on + strand, within GFF899 at 968.901 kb on + strand, within GFF899 at 968.955 kb on + strand, within GFF899 at 968.955 kb on + strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 969.193 kb on + strand at 969.193 kb on + strand at 969.194 kb on - strand at 969.194 kb on - strand at 969.262 kb on + strand at 969.262 kb on + strand at 969.262 kb on + strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.263 kb on - strand at 969.428 kb on + strand, within GFF900 at 969.429 kb on - strand, within GFF900 at 969.469 kb on + strand, within GFF900 at 969.664 kb on + strand, within GFF900 at 969.667 kb on + strand, within GFF900 at 969.667 kb on + strand, within GFF900 at 969.667 kb on + strand, within GFF900 at 969.668 kb on - strand, within GFF900 at 969.668 kb on - strand, within GFF900 at 969.680 kb on - strand, within GFF900 at 970.035 kb on - strand, within GFF900
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 967,679 + GFF898 0.62 -0.1 967,679 + GFF898 0.62 +2.2 967,679 + GFF898 0.62 -0.4 967,680 - GFF898 0.62 +1.0 967,686 - GFF898 0.63 -0.3 967,686 - GFF898 0.63 -0.8 967,686 - GFF898 0.63 +0.9 968,064 + +0.3 968,065 - -0.1 968,065 - -0.7 968,153 + -0.8 968,160 + -0.8 968,161 - -0.3 968,161 - +1.2 968,494 + +0.1 968,501 + +0.4 968,502 - -0.3 968,625 + GFF899 0.14 -0.5 968,625 + GFF899 0.14 -0.9 968,625 + GFF899 0.14 +0.3 968,625 + GFF899 0.14 +0.1 968,626 - GFF899 0.14 +0.3 968,626 - GFF899 0.14 +1.2 968,754 + GFF899 0.37 -0.3 968,754 + GFF899 0.37 -1.0 968,755 - GFF899 0.38 +0.0 968,755 - GFF899 0.38 +0.8 968,860 + GFF899 0.57 -1.2 968,860 + GFF899 0.57 +0.5 968,901 + GFF899 0.65 +0.4 968,901 + GFF899 0.65 -0.3 968,955 + GFF899 0.75 +0.3 968,955 + GFF899 0.75 -0.2 968,956 - GFF899 0.75 +0.0 968,956 - GFF899 0.75 +0.1 968,956 - GFF899 0.75 +0.1 969,193 + -0.9 969,193 + +0.2 969,194 - +0.4 969,194 - +0.2 969,262 + +2.2 969,262 + -0.6 969,262 + -0.1 969,263 - -0.1 969,263 - +0.6 969,263 - -0.7 969,263 - +1.1 969,263 - +0.3 969,428 + GFF900 0.14 +0.7 969,429 - GFF900 0.15 +0.5 969,469 + GFF900 0.17 +0.2 969,664 + GFF900 0.28 -0.4 969,667 + GFF900 0.28 +0.7 969,667 + GFF900 0.28 -0.3 969,667 + GFF900 0.28 -0.4 969,668 - GFF900 0.28 +0.0 969,668 - GFF900 0.28 -0.9 969,680 - GFF900 0.29 -1.0 970,035 - GFF900 0.50 +0.1
Or see this region's nucleotide sequence