Strain Fitness in Xanthobacter sp. DMC5 around GFF888

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF886 and GFF887 are separated by 11 nucleotidesGFF887 and GFF888 overlap by 1 nucleotidesGFF888 and GFF889 are separated by 99 nucleotidesGFF889 and GFF890 are separated by 66 nucleotides GFF886 - hypothetical protein, at 957,963 to 958,511 GFF886 GFF887 - hypothetical protein, at 958,523 to 959,038 GFF887 GFF888 - hypothetical protein, at 959,038 to 959,610 GFF888 GFF889 - NAD-dependent protein deacetylase, at 959,710 to 960,480 GFF889 GFF890 - Lactoylglutathione lyase, at 960,547 to 960,969 GFF890 Position (kb) 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.116 kb on + strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.117 kb on - strand, within GFF886at 958.173 kb on + strand, within GFF886at 958.334 kb on + strand, within GFF886at 958.335 kb on - strand, within GFF886at 958.335 kb on - strand, within GFF886at 958.422 kb on + strand, within GFF886at 958.422 kb on + strand, within GFF886at 958.423 kb on - strand, within GFF886at 958.467 kb on + strandat 958.467 kb on + strandat 958.468 kb on - strandat 958.468 kb on - strandat 958.468 kb on - strandat 958.468 kb on - strandat 958.468 kb on - strandat 958.495 kb on - strandat 958.509 kb on + strandat 958.509 kb on + strandat 958.510 kb on - strandat 958.524 kb on + strandat 958.525 kb on - strandat 958.525 kb on - strandat 958.525 kb on - strandat 958.741 kb on + strand, within GFF887at 958.741 kb on + strand, within GFF887at 958.742 kb on - strand, within GFF887at 958.742 kb on - strand, within GFF887at 959.506 kb on + strand, within GFF888at 959.660 kb on + strandat 959.662 kb on - strandat 959.662 kb on - strandat 960.056 kb on + strand, within GFF889at 960.057 kb on - strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.086 kb on + strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.087 kb on - strand, within GFF889at 960.166 kb on - strand, within GFF889at 960.473 kb on + strandat 960.473 kb on + strandat 960.473 kb on + strandat 960.473 kb on + strandat 960.474 kb on - strandat 960.474 kb on - strandat 960.474 kb on - strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.480 kb on + strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.481 kb on - strandat 960.492 kb on + strandat 960.492 kb on + strandat 960.493 kb on - strandat 960.493 kb on - strandat 960.530 kb on + strandat 960.530 kb on + strandat 960.530 kb on + strandat 960.530 kb on + strandat 960.531 kb on - strandat 960.604 kb on + strand, within GFF890at 960.604 kb on + strand, within GFF890at 960.605 kb on - strand, within GFF890

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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958,116 + GFF886 0.28 -0.1
958,116 + GFF886 0.28 +0.2
958,116 + GFF886 0.28 -0.1
958,116 + GFF886 0.28 -2.0
958,116 + GFF886 0.28 +0.2
958,116 + GFF886 0.28 -0.7
958,116 + GFF886 0.28 -0.3
958,116 + GFF886 0.28 -0.2
958,116 + GFF886 0.28 -1.2
958,116 + GFF886 0.28 +0.7
958,117 - GFF886 0.28 -0.2
958,117 - GFF886 0.28 +0.3
958,117 - GFF886 0.28 -0.7
958,117 - GFF886 0.28 -0.1
958,173 + GFF886 0.38 -1.5
958,334 + GFF886 0.68 -0.1
958,335 - GFF886 0.68 +1.9
958,335 - GFF886 0.68 -1.1
958,422 + GFF886 0.84 +0.6
958,422 + GFF886 0.84 -1.2
958,423 - GFF886 0.84 -0.8
958,467 + -1.6
958,467 + -0.1
958,468 - +0.5
958,468 - -0.4
958,468 - +0.2
958,468 - +2.2
958,468 - -0.3
958,495 - -0.6
958,509 + -0.6
958,509 + -0.1
958,510 - +0.0
958,524 + -1.6
958,525 - +0.6
958,525 - +0.5
958,525 - +0.4
958,741 + GFF887 0.42 +0.6
958,741 + GFF887 0.42 -0.1
958,742 - GFF887 0.42 +1.0
958,742 - GFF887 0.42 -0.6
959,506 + GFF888 0.82 -1.1
959,660 + -0.2
959,662 - -0.1
959,662 - +0.5
960,056 + GFF889 0.45 +0.2
960,057 - GFF889 0.45 -0.3
960,086 + GFF889 0.49 +0.5
960,086 + GFF889 0.49 -0.4
960,086 + GFF889 0.49 -1.0
960,086 + GFF889 0.49 +0.2
960,086 + GFF889 0.49 +0.8
960,086 + GFF889 0.49 -0.4
960,086 + GFF889 0.49 -0.6
960,087 - GFF889 0.49 -1.6
960,087 - GFF889 0.49 -0.1
960,087 - GFF889 0.49 +1.2
960,087 - GFF889 0.49 -0.7
960,087 - GFF889 0.49 +1.4
960,087 - GFF889 0.49 +0.3
960,087 - GFF889 0.49 +0.8
960,166 - GFF889 0.59 +1.2
960,473 + -0.3
960,473 + +0.2
960,473 + -1.4
960,473 + -0.8
960,474 - -1.1
960,474 - +1.1
960,474 - +0.2
960,480 + +1.1
960,480 + +0.3
960,480 + -0.4
960,480 + -0.5
960,480 + +0.0
960,480 + -0.4
960,481 - -1.0
960,481 - +1.3
960,481 - -1.2
960,481 - -0.1
960,481 - +0.2
960,492 + -0.8
960,492 + +0.6
960,493 - +0.8
960,493 - +0.4
960,530 + -1.1
960,530 + +0.0
960,530 + +0.1
960,530 + +1.2
960,531 - -1.6
960,604 + GFF890 0.13 -1.8
960,604 + GFF890 0.13 -0.3
960,605 - GFF890 0.14 +0.2

Or see this region's nucleotide sequence