Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF871 and GFF872 are separated by 54 nucleotides GFF872 and GFF873 are separated by 171 nucleotides GFF873 and GFF874 overlap by 8 nucleotides GFF874 and GFF875 are separated by 13 nucleotides
GFF871 - hypothetical protein, at 945,242 to 945,439
GFF871
GFF872 - hypothetical protein, at 945,494 to 945,823
GFF872
GFF873 - hypothetical protein, at 945,995 to 946,492
GFF873
GFF874 - hypothetical protein, at 946,485 to 946,613
GFF874
GFF875 - hypothetical protein, at 946,627 to 947,445
GFF875
Position (kb) 945
946
947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.069 kb on - strand at 945.099 kb on - strand at 945.135 kb on + strand at 945.136 kb on - strand at 945.136 kb on - strand at 945.136 kb on - strand at 945.311 kb on + strand, within GFF871 at 945.312 kb on - strand, within GFF871 at 945.312 kb on - strand, within GFF871 at 945.393 kb on - strand, within GFF871 at 945.393 kb on - strand, within GFF871 at 945.758 kb on + strand, within GFF872 at 945.817 kb on + strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.822 kb on - strand at 945.839 kb on - strand at 945.839 kb on - strand at 945.875 kb on - strand at 945.875 kb on - strand at 945.887 kb on - strand at 945.992 kb on + strand at 945.993 kb on - strand at 946.088 kb on - strand, within GFF873 at 946.445 kb on + strand at 946.824 kb on + strand, within GFF875 at 946.846 kb on + strand, within GFF875 at 946.847 kb on - strand, within GFF875 at 946.847 kb on - strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.931 kb on - strand, within GFF875 at 946.944 kb on + strand, within GFF875 at 946.984 kb on + strand, within GFF875 at 946.984 kb on + strand, within GFF875 at 947.158 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.169 kb on + strand, within GFF875 at 947.169 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.481 kb on + strand at 947.481 kb on + strand at 947.481 kb on + strand at 947.482 kb on - strand at 947.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 945,069 - -1.1 945,099 - +0.5 945,135 + -0.7 945,136 - -0.5 945,136 - -0.2 945,136 - +0.5 945,311 + GFF871 0.35 +0.5 945,312 - GFF871 0.35 -0.4 945,312 - GFF871 0.35 -0.9 945,393 - GFF871 0.76 -0.3 945,393 - GFF871 0.76 -0.4 945,758 + GFF872 0.80 -0.4 945,817 + -1.0 945,818 - +0.5 945,818 - +0.5 945,818 - +0.3 945,818 - -0.2 945,818 - -0.8 945,818 - -0.5 945,818 - +0.5 945,818 - -1.3 945,818 - +0.3 945,818 - -0.5 945,818 - +0.0 945,818 - +1.2 945,818 - -0.8 945,822 - -0.5 945,839 - +0.6 945,839 - -2.7 945,875 - -0.0 945,875 - -0.0 945,887 - +0.1 945,992 + -0.2 945,993 - +0.5 946,088 - GFF873 0.19 -0.9 946,445 + +0.2 946,824 + GFF875 0.24 -0.2 946,846 + GFF875 0.27 +0.9 946,847 - GFF875 0.27 +0.7 946,847 - GFF875 0.27 +0.2 946,930 + GFF875 0.37 -1.0 946,930 + GFF875 0.37 -0.7 946,930 + GFF875 0.37 -0.8 946,930 + GFF875 0.37 -0.0 946,931 - GFF875 0.37 -1.3 946,944 + GFF875 0.39 -1.9 946,984 + GFF875 0.44 -0.9 946,984 + GFF875 0.44 +0.9 947,158 + GFF875 0.65 -0.4 947,160 + GFF875 0.65 -1.1 947,160 + GFF875 0.65 -1.8 947,160 + GFF875 0.65 +1.2 947,160 + GFF875 0.65 -0.8 947,161 - GFF875 0.65 +1.2 947,161 - GFF875 0.65 +1.0 947,161 - GFF875 0.65 -0.8 947,161 - GFF875 0.65 -0.2 947,169 + GFF875 0.66 -0.3 947,169 + GFF875 0.66 -0.0 947,239 + GFF875 0.75 -1.5 947,239 + GFF875 0.75 -1.6 947,239 + GFF875 0.75 -0.1 947,239 + GFF875 0.75 +0.1 947,481 + -1.4 947,481 + +2.5 947,481 + -1.1 947,482 - -0.2 947,482 - -0.4
Or see this region's nucleotide sequence