Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF840 and GFF841 are separated by 113 nucleotides GFF841 and GFF842 are separated by 50 nucleotides GFF842 and GFF843 are separated by 14 nucleotides
GFF840 - GTPase HflX, at 903,463 to 904,884
GFF840
GFF841 - RNA-binding protein Hfq, at 904,998 to 905,351
GFF841
GFF842 - D-alanine aminotransferase, at 905,402 to 906,259
GFF842
GFF843 - Trk system potassium uptake protein TrkH, at 906,274 to 907,686
GFF843
Position (kb) 904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2 at 904.148 kb on + strand, within GFF840 at 904.596 kb on - strand, within GFF840 at 904.701 kb on + strand, within GFF840 at 904.702 kb on - strand, within GFF840 at 904.801 kb on - strand at 904.801 kb on - strand at 904.904 kb on + strand at 904.936 kb on - strand at 904.999 kb on + strand at 905.000 kb on - strand at 905.000 kb on - strand at 905.081 kb on - strand, within GFF841 at 905.299 kb on + strand, within GFF841 at 905.308 kb on + strand, within GFF841 at 905.308 kb on + strand, within GFF841 at 905.309 kb on - strand, within GFF841 at 905.334 kb on - strand at 905.606 kb on + strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.902 kb on + strand, within GFF842 at 905.991 kb on + strand, within GFF842 at 905.992 kb on - strand, within GFF842 at 905.998 kb on + strand, within GFF842 at 905.998 kb on + strand, within GFF842 at 905.999 kb on - strand, within GFF842 at 906.064 kb on + strand, within GFF842 at 906.064 kb on + strand, within GFF842 at 906.064 kb on + strand, within GFF842 at 906.162 kb on + strand, within GFF842 at 906.184 kb on - strand at 906.228 kb on + strand at 906.228 kb on + strand at 906.228 kb on + strand at 906.229 kb on - strand at 906.229 kb on - strand at 906.229 kb on - strand at 906.229 kb on - strand at 906.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 904,148 + GFF840 0.48 -0.4 904,596 - GFF840 0.80 -2.5 904,701 + GFF840 0.87 +0.4 904,702 - GFF840 0.87 -0.5 904,801 - +1.0 904,801 - -0.3 904,904 + -1.0 904,936 - +0.0 904,999 + -1.6 905,000 - -0.6 905,000 - +0.2 905,081 - GFF841 0.23 +0.2 905,299 + GFF841 0.85 -0.3 905,308 + GFF841 0.88 +0.0 905,308 + GFF841 0.88 -1.0 905,309 - GFF841 0.88 +0.6 905,334 - +0.1 905,606 + GFF842 0.24 +0.6 905,725 - GFF842 0.38 +1.9 905,725 - GFF842 0.38 +0.7 905,725 - GFF842 0.38 +0.4 905,902 + GFF842 0.58 +0.4 905,991 + GFF842 0.69 +0.0 905,992 - GFF842 0.69 +0.0 905,998 + GFF842 0.69 +0.4 905,998 + GFF842 0.69 +1.1 905,999 - GFF842 0.70 +0.5 906,064 + GFF842 0.77 -0.4 906,064 + GFF842 0.77 -0.6 906,064 + GFF842 0.77 +0.3 906,162 + GFF842 0.89 -1.1 906,184 - +0.1 906,228 + -0.3 906,228 + -0.4 906,228 + +0.5 906,229 - +0.4 906,229 - +0.0 906,229 - +0.0 906,229 - +0.3 906,244 - +0.8
Or see this region's nucleotide sequence