Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF838 and GFF839 are separated by 126 nucleotides GFF839 and GFF840 are separated by 15 nucleotides GFF840 and GFF841 are separated by 113 nucleotides GFF841 and GFF842 are separated by 50 nucleotides
GFF838 - S-adenosyl-L-methionine-binding protein, at 902,008 to 902,472
GFF838
GFF839 - Nucleoside triphosphate pyrophosphohydrolase, at 902,599 to 903,447
GFF839
GFF840 - GTPase HflX, at 903,463 to 904,884
GFF840
GFF841 - RNA-binding protein Hfq, at 904,998 to 905,351
GFF841
GFF842 - D-alanine aminotransferase, at 905,402 to 906,259
GFF842
Position (kb) 903
904
905 Strain fitness (log2 ratio) -2
-1
0
1
2 at 902.503 kb on - strand at 902.503 kb on - strand at 902.503 kb on - strand at 902.567 kb on + strand at 902.568 kb on - strand at 902.568 kb on - strand at 902.580 kb on + strand at 902.710 kb on + strand, within GFF839 at 902.728 kb on + strand, within GFF839 at 902.729 kb on - strand, within GFF839 at 903.269 kb on + strand, within GFF839 at 903.269 kb on + strand, within GFF839 at 903.269 kb on + strand, within GFF839 at 903.270 kb on - strand, within GFF839 at 903.446 kb on - strand at 903.464 kb on + strand at 903.594 kb on - strand at 903.985 kb on + strand, within GFF840 at 904.148 kb on + strand, within GFF840 at 904.596 kb on - strand, within GFF840 at 904.701 kb on + strand, within GFF840 at 904.702 kb on - strand, within GFF840 at 904.801 kb on - strand at 904.801 kb on - strand at 904.904 kb on + strand at 904.936 kb on - strand at 904.999 kb on + strand at 905.000 kb on - strand at 905.000 kb on - strand at 905.081 kb on - strand, within GFF841 at 905.299 kb on + strand, within GFF841 at 905.308 kb on + strand, within GFF841 at 905.308 kb on + strand, within GFF841 at 905.309 kb on - strand, within GFF841 at 905.334 kb on - strand at 905.606 kb on + strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.725 kb on - strand, within GFF842
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 902,503 - +0.2 902,503 - +1.4 902,503 - +0.4 902,567 + -0.3 902,568 - -0.3 902,568 - +0.4 902,580 + +0.2 902,710 + GFF839 0.13 +0.1 902,728 + GFF839 0.15 +1.0 902,729 - GFF839 0.15 -0.5 903,269 + GFF839 0.79 -1.3 903,269 + GFF839 0.79 +0.2 903,269 + GFF839 0.79 -0.2 903,270 - GFF839 0.79 +1.8 903,446 - +0.8 903,464 + +0.4 903,594 - -0.9 903,985 + GFF840 0.37 +0.1 904,148 + GFF840 0.48 -0.4 904,596 - GFF840 0.80 -2.5 904,701 + GFF840 0.87 +0.4 904,702 - GFF840 0.87 -0.5 904,801 - +1.0 904,801 - -0.3 904,904 + -1.0 904,936 - +0.0 904,999 + -1.6 905,000 - -0.6 905,000 - +0.2 905,081 - GFF841 0.23 +0.2 905,299 + GFF841 0.85 -0.3 905,308 + GFF841 0.88 +0.0 905,308 + GFF841 0.88 -1.0 905,309 - GFF841 0.88 +0.6 905,334 - +0.1 905,606 + GFF842 0.24 +0.6 905,725 - GFF842 0.38 +1.9 905,725 - GFF842 0.38 +0.7 905,725 - GFF842 0.38 +0.4
Or see this region's nucleotide sequence