Strain Fitness in Xanthobacter sp. DMC5 around GFF836

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF835 and GFF836 are separated by 86 nucleotidesGFF836 and GFF837 are separated by 762 nucleotides GFF835 - hypothetical protein, at 897,182 to 899,749 GFF835 GFF836 - Endolytic peptidoglycan transglycosylase RlpA, at 899,836 to 900,195 GFF836 GFF837 - hypothetical protein, at 900,958 to 901,821 GFF837 Position (kb) 899 900 901Strain fitness (log2 ratio) -1 0 1at 899.757 kb on - strandat 900.090 kb on - strand, within GFF836at 900.090 kb on - strand, within GFF836at 900.090 kb on - strand, within GFF836at 900.187 kb on + strandat 900.187 kb on + strandat 900.187 kb on + strandat 900.188 kb on - strandat 900.188 kb on - strandat 900.593 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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899,757 - -0.6
900,090 - GFF836 0.71 -0.1
900,090 - GFF836 0.71 +0.1
900,090 - GFF836 0.71 -0.2
900,187 + -0.3
900,187 + +1.4
900,187 + -1.0
900,188 - -0.5
900,188 - +0.0
900,593 + -0.1

Or see this region's nucleotide sequence