Strain Fitness in Xanthobacter sp. DMC5 around GFF805

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF804 and GFF805 are separated by 412 nucleotidesGFF805 and GFF806 overlap by 26 nucleotidesGFF806 and GFF807 overlap by 8 nucleotides GFF804 - putative FMNH2-dependent monooxygenase SfnC, at 858,253 to 859,494 GFF804 GFF805 - Cysteine desulfurase, at 859,907 to 861,886 GFF805 GFF806 - Major membrane protein I, at 861,861 to 862,808 GFF806 GFF807 - hypothetical protein, at 862,801 to 863,913 GFF807 Position (kb) 859 860 861 862Strain fitness (log2 ratio) -1 0 1 2at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.007 kb on + strand, within GFF804at 859.008 kb on - strand, within GFF804at 859.010 kb on + strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.011 kb on - strand, within GFF804at 859.102 kb on - strand, within GFF804at 859.181 kb on + strand, within GFF804at 859.181 kb on + strand, within GFF804at 859.329 kb on + strand, within GFF804at 859.330 kb on - strand, within GFF804at 859.374 kb on - strandat 859.374 kb on - strandat 859.645 kb on + strandat 859.645 kb on + strandat 859.645 kb on + strandat 859.646 kb on - strandat 859.646 kb on - strandat 859.964 kb on + strandat 859.965 kb on - strandat 859.983 kb on + strandat 859.984 kb on - strandat 859.984 kb on - strandat 860.227 kb on - strand, within GFF805at 860.262 kb on + strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.263 kb on - strand, within GFF805at 860.340 kb on + strand, within GFF805at 860.340 kb on + strand, within GFF805at 860.341 kb on - strand, within GFF805at 860.427 kb on + strand, within GFF805at 860.667 kb on + strand, within GFF805at 860.668 kb on - strand, within GFF805at 860.823 kb on + strand, within GFF805at 860.823 kb on + strand, within GFF805at 860.824 kb on - strand, within GFF805at 860.824 kb on - strand, within GFF805at 860.824 kb on - strand, within GFF805at 860.932 kb on - strand, within GFF805at 860.932 kb on - strand, within GFF805at 860.997 kb on + strand, within GFF805at 861.313 kb on - strand, within GFF805at 861.527 kb on - strand, within GFF805at 861.868 kb on + strandat 861.868 kb on + strandat 861.880 kb on + strandat 861.889 kb on + strandat 861.908 kb on - strandat 861.970 kb on + strand, within GFF806at 861.970 kb on + strand, within GFF806at 861.970 kb on + strand, within GFF806at 861.971 kb on - strand, within GFF806at 861.971 kb on - strand, within GFF806at 862.126 kb on + strand, within GFF806at 862.126 kb on + strand, within GFF806at 862.126 kb on + strand, within GFF806at 862.127 kb on - strand, within GFF806at 862.127 kb on - strand, within GFF806at 862.127 kb on - strand, within GFF806at 862.127 kb on - strand, within GFF806at 862.379 kb on - strand, within GFF806at 862.391 kb on - strand, within GFF806at 862.463 kb on - strand, within GFF806at 862.474 kb on + strand, within GFF806at 862.475 kb on - strand, within GFF806at 862.531 kb on + strand, within GFF806at 862.531 kb on + strand, within GFF806at 862.532 kb on - strand, within GFF806at 862.532 kb on - strand, within GFF806at 862.552 kb on + strand, within GFF806at 862.552 kb on + strand, within GFF806at 862.552 kb on + strand, within GFF806at 862.657 kb on + strand, within GFF806at 862.657 kb on + strand, within GFF806at 862.658 kb on - strand, within GFF806

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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859,007 + GFF804 0.61 -1.0
859,007 + GFF804 0.61 -0.3
859,007 + GFF804 0.61 -0.1
859,007 + GFF804 0.61 +0.6
859,008 - GFF804 0.61 -0.8
859,010 + GFF804 0.61 -0.2
859,011 - GFF804 0.61 +0.4
859,011 - GFF804 0.61 +0.2
859,011 - GFF804 0.61 +2.2
859,102 - GFF804 0.68 -0.2
859,181 + GFF804 0.75 +0.1
859,181 + GFF804 0.75 -0.2
859,329 + GFF804 0.87 +0.5
859,330 - GFF804 0.87 -1.3
859,374 - -0.5
859,374 - -0.1
859,645 + -0.2
859,645 + -0.1
859,645 + +0.5
859,646 - -0.3
859,646 - -0.8
859,964 + -0.2
859,965 - -0.6
859,983 + -0.2
859,984 - +1.6
859,984 - -0.7
860,227 - GFF805 0.16 +0.5
860,262 + GFF805 0.18 +0.2
860,263 - GFF805 0.18 -0.4
860,263 - GFF805 0.18 -1.1
860,263 - GFF805 0.18 -0.2
860,263 - GFF805 0.18 -0.2
860,340 + GFF805 0.22 -0.6
860,340 + GFF805 0.22 -1.0
860,341 - GFF805 0.22 -0.8
860,427 + GFF805 0.26 -0.0
860,667 + GFF805 0.38 +0.0
860,668 - GFF805 0.38 -0.1
860,823 + GFF805 0.46 +0.5
860,823 + GFF805 0.46 +0.1
860,824 - GFF805 0.46 +0.4
860,824 - GFF805 0.46 +1.2
860,824 - GFF805 0.46 +0.0
860,932 - GFF805 0.52 -1.3
860,932 - GFF805 0.52 +0.8
860,997 + GFF805 0.55 +0.2
861,313 - GFF805 0.71 -0.4
861,527 - GFF805 0.82 +0.5
861,868 + -0.5
861,868 + -0.5
861,880 + +0.7
861,889 + +0.0
861,908 - -1.1
861,970 + GFF806 0.11 +0.4
861,970 + GFF806 0.11 +0.3
861,970 + GFF806 0.11 +2.2
861,971 - GFF806 0.12 -0.3
861,971 - GFF806 0.12 -0.2
862,126 + GFF806 0.28 -0.5
862,126 + GFF806 0.28 +0.6
862,126 + GFF806 0.28 +0.4
862,127 - GFF806 0.28 -1.0
862,127 - GFF806 0.28 -1.0
862,127 - GFF806 0.28 -0.6
862,127 - GFF806 0.28 +0.9
862,379 - GFF806 0.55 -0.6
862,391 - GFF806 0.56 +1.7
862,463 - GFF806 0.64 +1.0
862,474 + GFF806 0.65 -0.2
862,475 - GFF806 0.65 +1.2
862,531 + GFF806 0.71 +0.2
862,531 + GFF806 0.71 -0.1
862,532 - GFF806 0.71 +0.0
862,532 - GFF806 0.71 +0.9
862,552 + GFF806 0.73 -0.2
862,552 + GFF806 0.73 -0.4
862,552 + GFF806 0.73 -0.1
862,657 + GFF806 0.84 +0.8
862,657 + GFF806 0.84 +0.4
862,658 - GFF806 0.84 +0.2

Or see this region's nucleotide sequence