Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF716 and GFF717 are separated by 124 nucleotides GFF717 and GFF718 are separated by 161 nucleotides GFF718 and GFF719 are separated by 10 nucleotides GFF719 and GFF720 are separated by 5 nucleotides
GFF716 - DNA repair protein RecO, at 764,891 to 765,625
GFF716
GFF717 - hypothetical protein, at 765,750 to 766,064
GFF717
GFF718 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 766,226 to 767,236
GFF718
GFF719 - hypothetical protein, at 767,247 to 767,603
GFF719
GFF720 - 1-deoxy-D-xylulose-5-phosphate synthase, at 767,609 to 769,000
GFF720
Position (kb) 766
767
768 Strain fitness (log2 ratio) -2
-1
0
1 at 765.420 kb on + strand, within GFF716 at 766.072 kb on + strand at 766.507 kb on + strand, within GFF718 at 766.668 kb on - strand, within GFF718 at 766.778 kb on + strand, within GFF718 at 766.800 kb on - strand, within GFF718 at 766.986 kb on - strand, within GFF718 at 767.266 kb on + strand at 767.382 kb on + strand, within GFF719
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 765,420 + GFF716 0.72 -0.6 766,072 + -2.3 766,507 + GFF718 0.28 +0.2 766,668 - GFF718 0.44 -1.3 766,778 + GFF718 0.55 -0.3 766,800 - GFF718 0.57 -0.8 766,986 - GFF718 0.75 -0.1 767,266 + -0.3 767,382 + GFF719 0.38 -0.5
Or see this region's nucleotide sequence