Strain Fitness in Xanthobacter sp. DMC5 around GFF620

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF619 and GFF620 are separated by 26 nucleotidesGFF620 and GFF621 overlap by 4 nucleotidesGFF621 and GFF622 are separated by 157 nucleotides GFF619 - GTP pyrophosphokinase rsh, at 658,500 to 660,710 GFF619 GFF620 - Pyridoxine 5'-phosphate synthase, at 660,737 to 661,507 GFF620 GFF621 - Holo-[acyl-carrier-protein] synthase, at 661,504 to 661,911 GFF621 GFF622 - Signal peptidase I, at 662,069 to 662,821 GFF622 Position (kb) 660 661 662Strain fitness (log2 ratio) -2 -1 0 1at 661.343 kb on + strand, within GFF620at 661.960 kb on + strandat 661.961 kb on - strandat 661.961 kb on - strandat 661.962 kb on + strandat 662.004 kb on + strandat 662.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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661,343 + GFF620 0.79 -0.8
661,960 + -1.1
661,961 - -2.3
661,961 - -0.4
661,962 + -1.1
662,004 + +1.7
662,033 + +0.7

Or see this region's nucleotide sequence