Strain Fitness in Xanthobacter sp. DMC5 around GFF576

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF575 and GFF576 are separated by 28 nucleotidesGFF576 and GFF577 overlap by 4 nucleotides GFF575 - Serine hydroxymethyltransferase 2, at 615,196 to 616,509 GFF575 GFF576 - Transcriptional repressor NrdR, at 616,538 to 617,083 GFF576 GFF577 - Riboflavin biosynthesis protein RibD, at 617,080 to 618,228 GFF577 Position (kb) 616 617 618Strain fitness (log2 ratio) -1 0 1at 616.501 kb on + strandat 616.928 kb on + strand, within GFF576

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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616,501 + -1.3
616,928 + GFF576 0.71 -1.0

Or see this region's nucleotide sequence