Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF543 and GFF544 are separated by 123 nucleotides GFF544 and GFF545 are separated by 418 nucleotides GFF545 and GFF546 are separated by 149 nucleotides GFF546 and GFF547 are separated by 6 nucleotides
GFF543 - hypothetical protein, at 585,841 to 586,095
GFF543
GFF544 - hypothetical protein, at 586,219 to 586,524
GFF544
GFF545 - hypothetical protein, at 586,943 to 587,551
GFF545
GFF546 - hypothetical protein, at 587,701 to 588,078
GFF546
GFF547 - ATM1-type heavy metal exporter, at 588,085 to 590,040
GFF547
Position (kb) 586
587
588 Strain fitness (log2 ratio) -1
0
1
2 at 585.944 kb on - strand, within GFF543 at 586.154 kb on - strand at 586.234 kb on + strand at 586.339 kb on + strand, within GFF544 at 586.340 kb on - strand, within GFF544 at 586.477 kb on + strand, within GFF544 at 586.478 kb on - strand, within GFF544 at 586.713 kb on - strand at 586.713 kb on - strand at 586.717 kb on - strand at 586.786 kb on + strand at 586.944 kb on + strand at 586.944 kb on + strand at 586.945 kb on - strand at 586.945 kb on - strand at 586.945 kb on - strand at 587.354 kb on - strand, within GFF545 at 587.524 kb on - strand at 587.606 kb on - strand at 587.965 kb on + strand, within GFF546 at 587.966 kb on - strand, within GFF546 at 587.966 kb on - strand, within GFF546 at 588.076 kb on + strand at 588.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 585,944 - GFF543 0.40 -0.0 586,154 - +0.7 586,234 + +1.8 586,339 + GFF544 0.39 -0.0 586,340 - GFF544 0.40 -1.1 586,477 + GFF544 0.84 -0.1 586,478 - GFF544 0.85 -1.0 586,713 - -0.3 586,713 - +1.0 586,717 - +0.3 586,786 + +0.6 586,944 + -0.1 586,944 + -0.4 586,945 - +0.2 586,945 - +0.2 586,945 - +1.0 587,354 - GFF545 0.67 -0.9 587,524 - -0.1 587,606 - -1.7 587,965 + GFF546 0.70 -0.6 587,966 - GFF546 0.70 -0.3 587,966 - GFF546 0.70 +0.3 588,076 + -0.3 588,169 + +0.5
Or see this region's nucleotide sequence