Strain Fitness in Xanthobacter sp. DMC5 around GFF514

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF513 and GFF514 are separated by 213 nucleotidesGFF514 and GFF515 are separated by 35 nucleotidesGFF515 and GFF516 are separated by 101 nucleotides GFF513 - hypothetical protein, at 545,801 to 547,882 GFF513 GFF514 - hypothetical protein, at 548,096 to 550,147 GFF514 GFF515 - hypothetical protein, at 550,183 to 550,494 GFF515 GFF516 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 550,596 to 552,386 GFF516 Position (kb) 548 549 550 551Strain fitness (log2 ratio) -2 -1 0 1 2at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.402 kb on + strand, within GFF513at 547.403 kb on - strand, within GFF513at 547.742 kb on + strandat 547.742 kb on + strandat 547.742 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 548.160 kb on + strandat 548.160 kb on + strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.185 kb on + strandat 548.294 kb on + strandat 548.397 kb on - strand, within GFF514at 548.397 kb on - strand, within GFF514at 548.518 kb on - strand, within GFF514at 548.531 kb on + strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.624 kb on + strand, within GFF514at 548.624 kb on + strand, within GFF514at 548.625 kb on - strand, within GFF514at 548.630 kb on + strand, within GFF514at 548.802 kb on + strand, within GFF514at 548.811 kb on - strand, within GFF514at 548.942 kb on + strand, within GFF514at 548.942 kb on + strand, within GFF514at 548.942 kb on + strand, within GFF514at 548.943 kb on - strand, within GFF514at 548.943 kb on - strand, within GFF514at 548.943 kb on - strand, within GFF514at 548.960 kb on + strand, within GFF514at 548.969 kb on + strand, within GFF514at 548.970 kb on - strand, within GFF514at 549.029 kb on + strand, within GFF514at 549.029 kb on + strand, within GFF514at 549.029 kb on + strand, within GFF514at 549.030 kb on - strand, within GFF514at 549.030 kb on - strand, within GFF514at 549.089 kb on + strand, within GFF514at 549.089 kb on + strand, within GFF514at 549.089 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.378 kb on - strand, within GFF514at 549.378 kb on - strand, within GFF514at 549.378 kb on - strand, within GFF514at 549.775 kb on - strand, within GFF514at 549.775 kb on - strand, within GFF514at 549.795 kb on + strand, within GFF514at 549.852 kb on + strand, within GFF514at 549.897 kb on + strand, within GFF514at 549.898 kb on - strand, within GFF514at 549.898 kb on - strand, within GFF514at 549.898 kb on - strand, within GFF514at 549.898 kb on - strand, within GFF514at 550.010 kb on - strandat 550.023 kb on - strandat 550.023 kb on - strandat 550.023 kb on - strandat 550.427 kb on + strand, within GFF515at 550.428 kb on - strand, within GFF515at 550.428 kb on - strand, within GFF515at 550.789 kb on + strand, within GFF516at 550.789 kb on + strand, within GFF516at 550.789 kb on + strand, within GFF516at 550.790 kb on - strand, within GFF516at 550.790 kb on - strand, within GFF516at 550.822 kb on + strand, within GFF516at 550.822 kb on + strand, within GFF516at 550.825 kb on + strand, within GFF516at 550.969 kb on + strand, within GFF516at 550.969 kb on + strand, within GFF516at 550.970 kb on - strand, within GFF516at 550.970 kb on - strand, within GFF516at 551.072 kb on - strand, within GFF516at 551.072 kb on - strand, within GFF516at 551.101 kb on + strand, within GFF516at 551.101 kb on + strand, within GFF516at 551.102 kb on - strand, within GFF516at 551.102 kb on - strand, within GFF516at 551.102 kb on - strand, within GFF516at 551.129 kb on - strand, within GFF516at 551.144 kb on - strand, within GFF516

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
547,100 + GFF513 0.62 +0.0
547,100 + GFF513 0.62 +0.0
547,100 + GFF513 0.62 +0.4
547,100 + GFF513 0.62 +0.3
547,101 - GFF513 0.62 +0.3
547,101 - GFF513 0.62 +0.5
547,101 - GFF513 0.62 +0.7
547,402 + GFF513 0.77 +0.7
547,403 - GFF513 0.77 +1.1
547,742 + -0.1
547,742 + +0.5
547,742 + +0.5
547,880 + -0.2
547,880 + -0.2
547,880 + -1.2
547,880 + +0.5
547,880 + -1.8
548,160 + +2.4
548,160 + +0.5
548,161 - -0.6
548,161 - +0.2
548,161 - +0.3
548,161 - -1.7
548,185 + -0.3
548,294 + -0.6
548,397 - GFF514 0.15 -1.1
548,397 - GFF514 0.15 -0.3
548,518 - GFF514 0.21 -0.1
548,531 + GFF514 0.21 -0.4
548,532 - GFF514 0.21 -0.1
548,532 - GFF514 0.21 +0.6
548,532 - GFF514 0.21 +0.3
548,532 - GFF514 0.21 +1.0
548,624 + GFF514 0.26 +0.5
548,624 + GFF514 0.26 +0.2
548,625 - GFF514 0.26 +0.5
548,630 + GFF514 0.26 +0.1
548,802 + GFF514 0.34 -1.3
548,811 - GFF514 0.35 -1.0
548,942 + GFF514 0.41 +2.4
548,942 + GFF514 0.41 -0.3
548,942 + GFF514 0.41 -0.9
548,943 - GFF514 0.41 -1.4
548,943 - GFF514 0.41 +0.1
548,943 - GFF514 0.41 +0.5
548,960 + GFF514 0.42 -0.9
548,969 + GFF514 0.43 +0.8
548,970 - GFF514 0.43 -0.2
549,029 + GFF514 0.45 -0.2
549,029 + GFF514 0.45 +0.9
549,029 + GFF514 0.45 +2.3
549,030 - GFF514 0.46 -0.6
549,030 - GFF514 0.46 -0.0
549,089 + GFF514 0.48 +0.8
549,089 + GFF514 0.48 +0.4
549,089 + GFF514 0.48 -0.1
549,377 + GFF514 0.62 +0.1
549,377 + GFF514 0.62 +0.1
549,377 + GFF514 0.62 +0.0
549,377 + GFF514 0.62 -1.0
549,377 + GFF514 0.62 +0.1
549,377 + GFF514 0.62 +0.3
549,378 - GFF514 0.62 -1.4
549,378 - GFF514 0.62 -0.5
549,378 - GFF514 0.62 -0.1
549,775 - GFF514 0.82 -0.5
549,775 - GFF514 0.82 +0.7
549,795 + GFF514 0.83 -1.1
549,852 + GFF514 0.86 -0.1
549,897 + GFF514 0.88 -0.5
549,898 - GFF514 0.88 -0.2
549,898 - GFF514 0.88 +0.2
549,898 - GFF514 0.88 -0.1
549,898 - GFF514 0.88 -0.1
550,010 - +0.4
550,023 - -0.4
550,023 - -0.2
550,023 - -1.6
550,427 + GFF515 0.78 -0.4
550,428 - GFF515 0.79 -1.6
550,428 - GFF515 0.79 -0.1
550,789 + GFF516 0.11 -1.1
550,789 + GFF516 0.11 +0.5
550,789 + GFF516 0.11 +0.2
550,790 - GFF516 0.11 +0.5
550,790 - GFF516 0.11 -0.3
550,822 + GFF516 0.13 -1.6
550,822 + GFF516 0.13 +0.1
550,825 + GFF516 0.13 -0.5
550,969 + GFF516 0.21 +0.9
550,969 + GFF516 0.21 -0.1
550,970 - GFF516 0.21 +1.3
550,970 - GFF516 0.21 -0.3
551,072 - GFF516 0.27 +0.3
551,072 - GFF516 0.27 -0.5
551,101 + GFF516 0.28 +0.9
551,101 + GFF516 0.28 -0.4
551,102 - GFF516 0.28 +0.5
551,102 - GFF516 0.28 +0.1
551,102 - GFF516 0.28 +1.0
551,129 - GFF516 0.30 -0.4
551,144 - GFF516 0.31 -0.6

Or see this region's nucleotide sequence