Strain Fitness in Xanthobacter sp. DMC5 around GFF512

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF511 and GFF512 are separated by 4 nucleotidesGFF512 and GFF513 are separated by 197 nucleotides GFF511 - Multidrug resistance protein MdtA, at 541,265 to 542,440 GFF511 GFF512 - Multidrug resistance protein MdtC, at 542,445 to 545,603 GFF512 GFF513 - hypothetical protein, at 545,801 to 547,882 GFF513 Position (kb) 542 543 544 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 541.602 kb on - strand, within GFF511at 541.706 kb on + strand, within GFF511at 541.706 kb on + strand, within GFF511at 541.707 kb on - strand, within GFF511at 541.838 kb on + strand, within GFF511at 541.839 kb on - strand, within GFF511at 541.842 kb on - strand, within GFF511at 541.842 kb on - strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.952 kb on + strand, within GFF511at 541.953 kb on - strand, within GFF511at 541.953 kb on - strand, within GFF511at 541.953 kb on - strand, within GFF511at 541.953 kb on - strand, within GFF511at 541.953 kb on - strand, within GFF511at 541.953 kb on - strand, within GFF511at 541.953 kb on - strand, within GFF511at 541.980 kb on - strand, within GFF511at 541.980 kb on - strand, within GFF511at 541.980 kb on - strand, within GFF511at 542.910 kb on + strand, within GFF512at 542.910 kb on + strand, within GFF512at 542.910 kb on + strand, within GFF512at 542.910 kb on + strand, within GFF512at 542.911 kb on - strand, within GFF512at 542.973 kb on + strand, within GFF512at 542.973 kb on + strand, within GFF512at 542.973 kb on + strand, within GFF512at 542.974 kb on - strand, within GFF512at 542.988 kb on + strand, within GFF512at 542.988 kb on + strand, within GFF512at 542.988 kb on + strand, within GFF512at 542.988 kb on + strand, within GFF512at 542.988 kb on + strand, within GFF512at 543.127 kb on + strand, within GFF512at 543.127 kb on + strand, within GFF512at 543.128 kb on - strand, within GFF512at 543.128 kb on - strand, within GFF512at 543.128 kb on - strand, within GFF512at 543.267 kb on - strand, within GFF512at 543.267 kb on - strand, within GFF512at 543.672 kb on + strand, within GFF512at 543.672 kb on + strand, within GFF512at 543.672 kb on + strand, within GFF512at 543.672 kb on + strand, within GFF512at 543.673 kb on - strand, within GFF512at 544.072 kb on - strand, within GFF512at 544.072 kb on - strand, within GFF512at 544.072 kb on - strand, within GFF512at 544.077 kb on + strand, within GFF512at 544.077 kb on + strand, within GFF512at 544.077 kb on + strand, within GFF512at 544.078 kb on - strand, within GFF512at 544.078 kb on - strand, within GFF512at 544.078 kb on - strand, within GFF512at 544.078 kb on - strand, within GFF512at 544.227 kb on + strand, within GFF512at 544.227 kb on + strand, within GFF512at 544.227 kb on + strand, within GFF512at 544.228 kb on - strand, within GFF512at 544.228 kb on - strand, within GFF512at 544.229 kb on + strand, within GFF512at 544.230 kb on - strand, within GFF512at 544.230 kb on - strand, within GFF512at 544.230 kb on - strand, within GFF512at 544.230 kb on - strand, within GFF512at 544.230 kb on - strand, within GFF512at 544.275 kb on - strand, within GFF512at 544.452 kb on + strand, within GFF512at 544.458 kb on + strand, within GFF512at 544.459 kb on - strand, within GFF512at 544.492 kb on - strand, within GFF512at 544.625 kb on + strand, within GFF512at 544.653 kb on + strand, within GFF512at 544.689 kb on + strand, within GFF512at 544.689 kb on + strand, within GFF512at 544.690 kb on - strand, within GFF512at 544.690 kb on - strand, within GFF512at 544.690 kb on - strand, within GFF512at 544.770 kb on + strand, within GFF512at 544.770 kb on + strand, within GFF512at 544.770 kb on + strand, within GFF512at 544.770 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.061 kb on + strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.062 kb on - strand, within GFF512at 545.082 kb on + strand, within GFF512at 545.083 kb on - strand, within GFF512at 545.083 kb on - strand, within GFF512at 545.083 kb on - strand, within GFF512at 545.481 kb on + strandat 545.481 kb on + strandat 545.481 kb on + strandat 545.482 kb on - strandat 545.482 kb on - strandat 545.482 kb on - strandat 545.487 kb on + strandat 545.488 kb on - strandat 545.488 kb on - strandat 545.543 kb on + strandat 545.544 kb on - strandat 545.544 kb on - strandat 545.641 kb on + strandat 545.642 kb on - strandat 545.642 kb on - strandat 545.681 kb on + strandat 545.681 kb on + strandat 545.681 kb on + strandat 545.682 kb on - strandat 545.813 kb on + strandat 545.813 kb on + strandat 545.957 kb on + strandat 545.958 kb on - strandat 545.999 kb on + strandat 546.000 kb on - strandat 546.071 kb on + strand, within GFF513at 546.071 kb on + strand, within GFF513at 546.071 kb on + strand, within GFF513at 546.072 kb on - strand, within GFF513at 546.072 kb on - strand, within GFF513at 546.072 kb on - strand, within GFF513at 546.135 kb on - strand, within GFF513at 546.167 kb on + strand, within GFF513at 546.233 kb on + strand, within GFF513at 546.236 kb on + strand, within GFF513at 546.237 kb on - strand, within GFF513at 546.237 kb on - strand, within GFF513at 546.353 kb on + strand, within GFF513at 546.533 kb on + strand, within GFF513at 546.534 kb on - strand, within GFF513at 546.534 kb on - strand, within GFF513at 546.539 kb on + strand, within GFF513at 546.539 kb on + strand, within GFF513at 546.539 kb on + strand, within GFF513at 546.540 kb on - strand, within GFF513at 546.602 kb on + strand, within GFF513at 546.603 kb on - strand, within GFF513at 546.603 kb on - strand, within GFF513at 546.603 kb on - strand, within GFF513

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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541,602 - GFF511 0.29 -1.2
541,706 + GFF511 0.38 -0.2
541,706 + GFF511 0.38 -0.1
541,707 - GFF511 0.38 -1.3
541,838 + GFF511 0.49 +0.0
541,839 - GFF511 0.49 -0.3
541,842 - GFF511 0.49 +1.2
541,842 - GFF511 0.49 +0.2
541,952 + GFF511 0.58 -0.4
541,952 + GFF511 0.58 -1.2
541,952 + GFF511 0.58 +0.2
541,952 + GFF511 0.58 -0.5
541,952 + GFF511 0.58 -1.9
541,952 + GFF511 0.58 +1.0
541,952 + GFF511 0.58 +0.6
541,952 + GFF511 0.58 +0.7
541,952 + GFF511 0.58 -1.0
541,952 + GFF511 0.58 -0.6
541,953 - GFF511 0.59 +0.2
541,953 - GFF511 0.59 +0.4
541,953 - GFF511 0.59 -2.0
541,953 - GFF511 0.59 +0.5
541,953 - GFF511 0.59 -0.9
541,953 - GFF511 0.59 +0.2
541,953 - GFF511 0.59 -0.1
541,980 - GFF511 0.61 -1.4
541,980 - GFF511 0.61 +0.0
541,980 - GFF511 0.61 +0.5
542,910 + GFF512 0.15 -0.7
542,910 + GFF512 0.15 +1.0
542,910 + GFF512 0.15 -0.2
542,910 + GFF512 0.15 -0.3
542,911 - GFF512 0.15 -0.5
542,973 + GFF512 0.17 -0.6
542,973 + GFF512 0.17 -0.1
542,973 + GFF512 0.17 +0.7
542,974 - GFF512 0.17 +0.2
542,988 + GFF512 0.17 +0.4
542,988 + GFF512 0.17 +0.2
542,988 + GFF512 0.17 -1.3
542,988 + GFF512 0.17 -1.4
542,988 + GFF512 0.17 -1.4
543,127 + GFF512 0.22 +0.3
543,127 + GFF512 0.22 +1.9
543,128 - GFF512 0.22 -1.0
543,128 - GFF512 0.22 -0.3
543,128 - GFF512 0.22 -0.4
543,267 - GFF512 0.26 -0.5
543,267 - GFF512 0.26 -0.3
543,672 + GFF512 0.39 -0.0
543,672 + GFF512 0.39 -0.4
543,672 + GFF512 0.39 -0.6
543,672 + GFF512 0.39 +0.3
543,673 - GFF512 0.39 +0.6
544,072 - GFF512 0.52 -1.1
544,072 - GFF512 0.52 +1.1
544,072 - GFF512 0.52 +0.2
544,077 + GFF512 0.52 +0.3
544,077 + GFF512 0.52 -0.2
544,077 + GFF512 0.52 -2.8
544,078 - GFF512 0.52 +0.1
544,078 - GFF512 0.52 +0.8
544,078 - GFF512 0.52 +0.9
544,078 - GFF512 0.52 +0.6
544,227 + GFF512 0.56 -0.4
544,227 + GFF512 0.56 -0.4
544,227 + GFF512 0.56 -0.6
544,228 - GFF512 0.56 -1.2
544,228 - GFF512 0.56 -1.4
544,229 + GFF512 0.56 +1.0
544,230 - GFF512 0.57 +0.4
544,230 - GFF512 0.57 +0.9
544,230 - GFF512 0.57 +0.2
544,230 - GFF512 0.57 +0.2
544,230 - GFF512 0.57 -0.1
544,275 - GFF512 0.58 +1.2
544,452 + GFF512 0.64 +0.2
544,458 + GFF512 0.64 -1.0
544,459 - GFF512 0.64 -1.5
544,492 - GFF512 0.65 -1.5
544,625 + GFF512 0.69 +0.9
544,653 + GFF512 0.70 -0.9
544,689 + GFF512 0.71 +0.9
544,689 + GFF512 0.71 -0.1
544,690 - GFF512 0.71 +0.9
544,690 - GFF512 0.71 +1.1
544,690 - GFF512 0.71 +0.0
544,770 + GFF512 0.74 +0.9
544,770 + GFF512 0.74 +0.5
544,770 + GFF512 0.74 -0.7
544,770 + GFF512 0.74 +1.6
545,061 + GFF512 0.83 -1.0
545,061 + GFF512 0.83 -0.1
545,061 + GFF512 0.83 +0.2
545,061 + GFF512 0.83 +0.4
545,061 + GFF512 0.83 -1.6
545,061 + GFF512 0.83 +1.4
545,062 - GFF512 0.83 +0.3
545,062 - GFF512 0.83 +0.4
545,062 - GFF512 0.83 -0.6
545,062 - GFF512 0.83 -0.3
545,082 + GFF512 0.83 +0.9
545,083 - GFF512 0.84 -0.8
545,083 - GFF512 0.84 -0.5
545,083 - GFF512 0.84 +1.2
545,481 + +0.1
545,481 + -0.6
545,481 + +0.1
545,482 - -0.1
545,482 - +0.7
545,482 - +0.8
545,487 + -1.0
545,488 - -0.4
545,488 - +0.7
545,543 + +0.2
545,544 - +1.8
545,544 - +0.5
545,641 + -0.7
545,642 - -0.9
545,642 - +0.2
545,681 + -1.2
545,681 + +0.1
545,681 + -1.0
545,682 - -0.4
545,813 + +0.2
545,813 + +0.6
545,957 + +1.0
545,958 - +0.8
545,999 + -0.9
546,000 - -0.6
546,071 + GFF513 0.13 -0.1
546,071 + GFF513 0.13 +0.7
546,071 + GFF513 0.13 +0.4
546,072 - GFF513 0.13 +0.0
546,072 - GFF513 0.13 +1.0
546,072 - GFF513 0.13 +0.7
546,135 - GFF513 0.16 +0.3
546,167 + GFF513 0.18 -0.2
546,233 + GFF513 0.21 -0.2
546,236 + GFF513 0.21 -1.0
546,237 - GFF513 0.21 +0.5
546,237 - GFF513 0.21 +2.0
546,353 + GFF513 0.27 +1.2
546,533 + GFF513 0.35 +0.4
546,534 - GFF513 0.35 -0.1
546,534 - GFF513 0.35 +0.9
546,539 + GFF513 0.35 +0.0
546,539 + GFF513 0.35 +1.2
546,539 + GFF513 0.35 -0.3
546,540 - GFF513 0.35 -0.0
546,602 + GFF513 0.38 +0.5
546,603 - GFF513 0.39 -0.1
546,603 - GFF513 0.39 +0.5
546,603 - GFF513 0.39 +0.1

Or see this region's nucleotide sequence