Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF504 and GFF505 are separated by 41 nucleotides GFF505 and GFF506 are separated by 46 nucleotides GFF506 and GFF507 are separated by 10 nucleotides GFF507 and GFF508 are separated by 145 nucleotides
GFF504 - Histidine N-alpha-methyltransferase, at 535,704 to 536,675
GFF504
GFF505 - hypothetical protein, at 536,717 to 536,959
GFF505
GFF506 - hypothetical protein, at 537,006 to 537,233
GFF506
GFF507 - hypothetical protein, at 537,244 to 537,531
GFF507
GFF508 - K(+)/H(+) antiporter NhaP2, at 537,677 to 539,455
GFF508
Position (kb) 537
538 Strain fitness (log2 ratio) -1
0
1
2 at 536.328 kb on + strand, within GFF504 at 536.360 kb on - strand, within GFF504 at 536.559 kb on + strand, within GFF504 at 536.560 kb on - strand, within GFF504 at 536.566 kb on - strand, within GFF504 at 536.705 kb on + strand at 536.705 kb on + strand at 536.705 kb on + strand at 536.706 kb on - strand at 537.003 kb on + strand at 537.003 kb on + strand at 537.005 kb on + strand at 537.005 kb on + strand at 537.330 kb on - strand, within GFF507 at 537.375 kb on - strand, within GFF507 at 537.375 kb on - strand, within GFF507 at 537.375 kb on - strand, within GFF507 at 537.504 kb on - strand at 537.504 kb on - strand at 537.538 kb on - strand at 537.601 kb on - strand at 537.610 kb on - strand at 537.852 kb on - strand at 537.863 kb on + strand, within GFF508 at 537.863 kb on + strand, within GFF508 at 537.863 kb on + strand, within GFF508 at 537.863 kb on + strand, within GFF508 at 537.864 kb on - strand, within GFF508
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 536,328 + GFF504 0.64 -0.4 536,360 - GFF504 0.67 -0.6 536,559 + GFF504 0.88 +0.6 536,560 - GFF504 0.88 -1.3 536,566 - GFF504 0.89 +2.0 536,705 + +1.6 536,705 + +0.0 536,705 + -0.5 536,706 - -0.0 537,003 + -0.2 537,003 + +0.8 537,005 + +0.8 537,005 + +0.2 537,330 - GFF507 0.30 +0.8 537,375 - GFF507 0.45 -1.5 537,375 - GFF507 0.45 -0.8 537,375 - GFF507 0.45 -0.6 537,504 - +0.3 537,504 - -0.8 537,538 - -0.0 537,601 - -1.6 537,610 - -0.5 537,852 - -0.8 537,863 + GFF508 0.10 +1.8 537,863 + GFF508 0.10 -1.0 537,863 + GFF508 0.10 +0.4 537,863 + GFF508 0.10 -0.2 537,864 - GFF508 0.11 +0.9
Or see this region's nucleotide sequence