Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4910 and GFF4911 overlap by 1 nucleotides GFF4911 and GFF4912 are separated by 53 nucleotides GFF4912 and GFF4913 are separated by 11 nucleotides
GFF4910 - hypothetical protein, at 12,980 to 14,923
GFF4910
GFF4911 - Multicopper oxidase MmcO, at 14,923 to 16,479
GFF4911
GFF4912 - hypothetical protein, at 16,533 to 16,907
GFF4912
GFF4913 - Cobalt-zinc-cadmium resistance protein CzcA, at 16,919 to 20,050
GFF4913
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.936 kb on - strand, within GFF4910 at 13.938 kb on + strand, within GFF4910 at 13.998 kb on + strand, within GFF4910 at 13.999 kb on - strand, within GFF4910 at 14.011 kb on - strand, within GFF4910 at 14.011 kb on - strand, within GFF4910 at 14.175 kb on + strand, within GFF4910 at 14.175 kb on + strand, within GFF4910 at 14.272 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.316 kb on - strand, within GFF4910 at 14.376 kb on + strand, within GFF4910 at 14.376 kb on + strand, within GFF4910 at 14.391 kb on + strand, within GFF4910 at 14.392 kb on - strand, within GFF4910 at 14.392 kb on - strand, within GFF4910 at 14.562 kb on + strand, within GFF4910 at 14.562 kb on + strand, within GFF4910 at 14.562 kb on + strand, within GFF4910 at 14.563 kb on - strand, within GFF4910 at 14.632 kb on + strand, within GFF4910 at 14.633 kb on - strand, within GFF4910 at 14.966 kb on + strand at 14.966 kb on + strand at 14.966 kb on + strand at 14.966 kb on + strand at 14.967 kb on - strand at 14.967 kb on - strand at 14.967 kb on - strand at 14.967 kb on - strand at 14.967 kb on - strand at 15.013 kb on + strand at 15.021 kb on + strand at 15.021 kb on + strand at 15.021 kb on + strand at 15.704 kb on + strand, within GFF4911 at 15.704 kb on + strand, within GFF4911 at 16.080 kb on + strand, within GFF4911 at 16.081 kb on - strand, within GFF4911 at 16.081 kb on - strand, within GFF4911 at 16.467 kb on + strand at 16.467 kb on + strand at 16.468 kb on - strand at 16.468 kb on - strand at 16.537 kb on + strand at 16.537 kb on + strand at 16.537 kb on + strand at 16.538 kb on - strand at 16.744 kb on + strand, within GFF4912 at 16.789 kb on + strand, within GFF4912 at 16.789 kb on + strand, within GFF4912 at 17.004 kb on + strand at 17.422 kb on - strand, within GFF4913 at 17.431 kb on - strand, within GFF4913
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 13,936 - GFF4910 0.49 -0.9 13,938 + GFF4910 0.49 +0.6 13,998 + GFF4910 0.52 -0.3 13,999 - GFF4910 0.52 +0.2 14,011 - GFF4910 0.53 -1.3 14,011 - GFF4910 0.53 +0.7 14,175 + GFF4910 0.61 +0.4 14,175 + GFF4910 0.61 +0.4 14,272 - GFF4910 0.66 -0.8 14,316 - GFF4910 0.69 +1.1 14,316 - GFF4910 0.69 +0.1 14,316 - GFF4910 0.69 +0.4 14,316 - GFF4910 0.69 +1.0 14,376 + GFF4910 0.72 -0.5 14,376 + GFF4910 0.72 +0.1 14,391 + GFF4910 0.73 -0.6 14,392 - GFF4910 0.73 +0.2 14,392 - GFF4910 0.73 -1.2 14,562 + GFF4910 0.81 +0.7 14,562 + GFF4910 0.81 +0.4 14,562 + GFF4910 0.81 -1.7 14,563 - GFF4910 0.81 -0.2 14,632 + GFF4910 0.85 -1.2 14,633 - GFF4910 0.85 +0.9 14,966 + -1.3 14,966 + +0.3 14,966 + -0.8 14,966 + -0.9 14,967 - -0.3 14,967 - +0.2 14,967 - -1.7 14,967 - -0.6 14,967 - -0.2 15,013 + -0.1 15,021 + -0.9 15,021 + -0.0 15,021 + +0.7 15,704 + GFF4911 0.50 +0.8 15,704 + GFF4911 0.50 +0.7 16,080 + GFF4911 0.74 +0.7 16,081 - GFF4911 0.74 +1.5 16,081 - GFF4911 0.74 +0.7 16,467 + +0.5 16,467 + -1.4 16,468 - -0.4 16,468 - +0.2 16,537 + -1.1 16,537 + +0.3 16,537 + +0.4 16,538 - -1.0 16,744 + GFF4912 0.56 +0.1 16,789 + GFF4912 0.68 -0.1 16,789 + GFF4912 0.68 +0.3 17,004 + -0.6 17,422 - GFF4913 0.16 -3.4 17,431 - GFF4913 0.16 +1.7
Or see this region's nucleotide sequence